Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 101143 |
| Name | oriT_FWSEC0030|unnamed2  |
| Organism | Escherichia coli strain FWSEC0030 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_RRDE01000169 (1914..2196 [+], 283 nt) |
| oriT length | 283 nt |
| IRs (inverted repeats) | 244..249, 252..257 (CGCCCC..GGGGCG) 184..189, 197..202 (ATAAAA..TTTTAT) 130..138, 148..156 (GCGGTGTTG..CAACACCGC) 31..37, 42..48 (GCAAAAA..TTTTTGC) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 283 nt
>oriT_FWSEC0030|unnamed2
GTTCTCATGCCTGAAATGTCCACACCCCACGCAAAAACAATTTTTTGCTGATTTTTCTTTATAAATAGAGAGTTATGACAAATTAGTTCTTCTTGCTCTCTTTGTGATATTTAAAAAAGCGGTGTCGGCGCGGTGTTGTAGCTGCGCCAACACCGCTTTTTAGGGGTGGTACTGACTATTTTCATAAAAAACATCATTTTATATCAGGGGTGCTGCTAGCGGCGCGGTGTGTTTTTTACAGGACGCCCCTGGGGGCGCTGCTAGGGGTGTCTGTTCAGATATG
GTTCTCATGCCTGAAATGTCCACACCCCACGCAAAAACAATTTTTTGCTGATTTTTCTTTATAAATAGAGAGTTATGACAAATTAGTTCTTCTTGCTCTCTTTGTGATATTTAAAAAAGCGGTGTCGGCGCGGTGTTGTAGCTGCGCCAACACCGCTTTTTAGGGGTGGTACTGACTATTTTCATAAAAAACATCATTTTATATCAGGGGTGCTGCTAGCGGCGCGGTGTGTTTTTTACAGGACGCCCCTGGGGGCGCTGCTAGGGGTGTCTGTTCAGATATG
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Host bacterium
| ID | 1587 | GenBank | NZ_RRDE01000169 |
| Plasmid name | FWSEC0030|unnamed2 | Incompatibility group | ColRNAI |
| Plasmid size | 4390 bp | Coordinate of oriT [Strand] | 1914..2196 [+] |
| Host baterium | Escherichia coli strain FWSEC0030 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |