Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 101121 |
| Name | oriT_FWSEC0030|unnamed1  |
| Organism | Escherichia coli strain FWSEC0030 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_RRDE01000160 (4023..4371 [+], 349 nt) |
| oriT length | 349 nt |
| IRs (inverted repeats) | 192..198, 206..212 (TATAAAA..TTTTATA) 40..47, 50..57 (GCAAAAAC..GTTTTTGC) 4..11, 16..23 (TTGGTGGT..ACCACCAA) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 349 nt
>oriT_FWSEC0030|unnamed1
AGATTGGTGGTTCTCACCACCAAAAGCACCACACCCCACGCAAAAACAAGTTTTTGCTGATTTTTATTTATAAATAGAGTTTTATGAAAAATTAGTTTCTCTTACTCTCTTTATGATATTTAAAAAAGCGGTGTCGGCGCGGCTACAACAACGCACCGACACCGCTTTGTAGGGGTAGTACTGACTATTTTTATAAAAAACATTATTTTATATTAGGGGTGCTGCTAGCGGCGCGGTGTGTTTCTTTATAGGATACCGCCAGGGGCACTGCTAGCGGTGCGTCCCTGTTTGCATTATGAATTTTAGTGTTTCTAAATTAACTTTATTTTATGTTCAAAAAAGGTAATCT
AGATTGGTGGTTCTCACCACCAAAAGCACCACACCCCACGCAAAAACAAGTTTTTGCTGATTTTTATTTATAAATAGAGTTTTATGAAAAATTAGTTTCTCTTACTCTCTTTATGATATTTAAAAAAGCGGTGTCGGCGCGGCTACAACAACGCACCGACACCGCTTTGTAGGGGTAGTACTGACTATTTTTATAAAAAACATTATTTTATATTAGGGGTGCTGCTAGCGGCGCGGTGTGTTTCTTTATAGGATACCGCCAGGGGCACTGCTAGCGGTGCGTCCCTGTTTGCATTATGAATTTTAGTGTTTCTAAATTAACTTTATTTTATGTTCAAAAAAGGTAATCT
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Host bacterium
| ID | 1565 | GenBank | NZ_RRDE01000160 |
| Plasmid name | FWSEC0030|unnamed1 | Incompatibility group | - |
| Plasmid size | 5158 bp | Coordinate of oriT [Strand] | 4023..4371 [+] |
| Host baterium | Escherichia coli strain FWSEC0030 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |