Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 101119 |
| Name | oriT1_p3122-7  |
| Organism | Klebsiella pneumoniae strain FK3122 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_JAOVSH010000007 ( 6847..6904 [+], 58 nt) |
| oriT length | 58 nt |
| IRs (inverted repeats) | 29..36, 39..46 (CACAGCGT..ACGCTGTG) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 58 nt
>oriT1_p3122-7
GGGTTTCGGGGCGCAGCCCTGAACCAGTCACAGCGTTTACGCTGTGTATACTGGCTTA
GGGTTTCGGGGCGCAGCCCTGAACCAGTCACAGCGTTTACGCTGTGTATACTGGCTTA
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 1134 | GenBank | WP_263405907 |
| Name | Relaxase_OCJ22_RS16760_p3122-7 |
UniProt ID | _ |
| Length | 398 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 398 a.a. Molecular weight: 44102.40 Da Isoelectric Point: 10.6336
>WP_263405907.1 MbeB family mobilization protein [Klebsiella pneumoniae]
MIVKFHPRGRGGGAGPVDYLLGKDRQRDGAIVLQGKPEEVRELIDASPYAKKYTSGVLSFAEQDLPPGQR
EKLMASFERVLMPGLDKDQYSVLWVEHRDKGRLELNFLVPNTELLTGRRLQPYYDRADRPRIDAWQTVVN
GRLGLHDPNAPENRRALVTPSSLPKTKQEAAEAITRGLLALASSGSLKRVRTSLRRWKAQVLRSCAPQRA
ASALPTRTEGETSDLREPSMNSLLTLAKDLEQKSKAQQQSTGEMLKAAFSEHEKSVRAELSESGKRISAA
IRAHEQGMSAAMQSNRLSVMRMVGRTWLTITMVSGLLFASLSGVLWYQGSLIASNLAEIDRQNAALSKLN
AKTWGVTYLEDSNGRFLVLPKGTAVDRTQSWTVGNGRSKQNALRLVKE
MIVKFHPRGRGGGAGPVDYLLGKDRQRDGAIVLQGKPEEVRELIDASPYAKKYTSGVLSFAEQDLPPGQR
EKLMASFERVLMPGLDKDQYSVLWVEHRDKGRLELNFLVPNTELLTGRRLQPYYDRADRPRIDAWQTVVN
GRLGLHDPNAPENRRALVTPSSLPKTKQEAAEAITRGLLALASSGSLKRVRTSLRRWKAQVLRSCAPQRA
ASALPTRTEGETSDLREPSMNSLLTLAKDLEQKSKAQQQSTGEMLKAAFSEHEKSVRAELSESGKRISAA
IRAHEQGMSAAMQSNRLSVMRMVGRTWLTITMVSGLLFASLSGVLWYQGSLIASNLAEIDRQNAALSKLN
AKTWGVTYLEDSNGRFLVLPKGTAVDRTQSWTVGNGRSKQNALRLVKE
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Auxiliary protein
| ID | 410 | GenBank | WP_062955149 |
| Name | WP_062955149_p3122-7 |
UniProt ID | A0A229UZL3 |
| Length | 114 a.a. | PDB ID | _ |
| Note | Predicted by oriTfinder 2.0 | ||
Auxiliary protein sequence
Download Length: 114 a.a. Molecular weight: 12838.82 Da Isoelectric Point: 10.0962
>WP_062955149.1 MULTISPECIES: MobC family plasmid mobilization relaxosome protein [Bacteria]
MAVKRTRFLGIRVTDGEYQQLLERCNGRQLAVWMRETCLDTRPARSLRLPSIDPVLLRQLAGMGNNLNQI
ARKINGGQWSGADRVQVVAALMAIDAELERLRHAVLEKGADDDR
MAVKRTRFLGIRVTDGEYQQLLERCNGRQLAVWMRETCLDTRPARSLRLPSIDPVLLRQLAGMGNNLNQI
ARKINGGQWSGADRVQVVAALMAIDAELERLRHAVLEKGADDDR
Protein domains
Predicted by InterproScan.
Protein structure
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A229UZL3 |
| ID | 410 | GenBank | WP_062955149 |
| Name | WP_062955149_p3122-7 |
UniProt ID | A0A229UZL3 |
| Length | 114 a.a. | PDB ID | _ |
| Note | Predicted by oriTfinder 2.0 | ||
Auxiliary protein sequence
Download Length: 114 a.a. Molecular weight: 12838.82 Da Isoelectric Point: 10.0962
>WP_062955149.1 MULTISPECIES: MobC family plasmid mobilization relaxosome protein [Bacteria]
MAVKRTRFLGIRVTDGEYQQLLERCNGRQLAVWMRETCLDTRPARSLRLPSIDPVLLRQLAGMGNNLNQI
ARKINGGQWSGADRVQVVAALMAIDAELERLRHAVLEKGADDDR
MAVKRTRFLGIRVTDGEYQQLLERCNGRQLAVWMRETCLDTRPARSLRLPSIDPVLLRQLAGMGNNLNQI
ARKINGGQWSGADRVQVVAALMAIDAELERLRHAVLEKGADDDR
Protein domains
Predicted by InterproScan.
Protein structure
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A229UZL3 |
Host bacterium
| ID | 1563 | GenBank | NZ_JAOVSH010000007 |
| Plasmid name | p3122-7 | Incompatibility group | ColRNAI |
| Plasmid size | 10040 bp | Coordinate of oriT [Strand] | 3595..3652 [+]; 6847..6904 [+] |
| Host baterium | Klebsiella pneumoniae strain FK3122 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |