Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 101118 |
| Name | oriT_pA-6726-C  |
| Organism | Shigella flexneri 1b strain A-6726 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_JASUAW010000036 (1245..1304 [+], 60 nt) |
| oriT length | 60 nt |
| IRs (inverted repeats) | _ |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 60 nt
>oriT_pA-6726-C
GGGTGTCGGGGCGAAGCCCTGACCCAGTCACGTAGCGATAGCGGAGTGTATACTGGCTTA
GGGTGTCGGGGCGAAGCCCTGACCCAGTCACGTAGCGATAGCGGAGTGTATACTGGCTTA
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Host bacterium
| ID | 1562 | GenBank | NZ_JASUAW010000036 |
| Plasmid name | pA-6726-C | Incompatibility group | Col |
| Plasmid size | 1812 bp | Coordinate of oriT [Strand] | 1245..1304 [+] |
| Host baterium | Shigella flexneri 1b strain A-6726 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |