Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 101096 |
| Name | oriT_FWSEC0034|unnamed10  |
| Organism | Escherichia coli strain FWSEC0034 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_RRDI01000209 (2307..2589 [-], 283 nt) |
| oriT length | 283 nt |
| IRs (inverted repeats) | 184..189, 197..202 (ATAAAA..TTTTAT) 119..125, 139..145 (GCGGTGT..ACACCGC) 31..38, 41..48 (GCAAAAAC..GTTTTTGC) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 283 nt
>oriT_FWSEC0034|unnamed10
GTTCTCATGCCTGAAATGCCCACACCCCACGCAAAAACAAGTTTTTGCTGATTTTTCTTTATAAATAGAGAGTTATGACAAATTAGTTTCTCTTGCTCTCTTTGTGATATTTAAAAAAGCGGTGTCGGCGCAGCTACAACACCGCGCCGACACCGCTTTGTAGGGGTGGTACTGACTATTTTCATAAAAAACATCATTTTATATTAGGGGTGCTGCTAGCGGCGCGGTGTGTTTTTTACAGGACACCCCTGGGGGCGCTGCCAGGGGTGTCTGTTCAGATATG
GTTCTCATGCCTGAAATGCCCACACCCCACGCAAAAACAAGTTTTTGCTGATTTTTCTTTATAAATAGAGAGTTATGACAAATTAGTTTCTCTTGCTCTCTTTGTGATATTTAAAAAAGCGGTGTCGGCGCAGCTACAACACCGCGCCGACACCGCTTTGTAGGGGTGGTACTGACTATTTTCATAAAAAACATCATTTTATATTAGGGGTGCTGCTAGCGGCGCGGTGTGTTTTTTACAGGACACCCCTGGGGGCGCTGCCAGGGGTGTCTGTTCAGATATG
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Host bacterium
| ID | 1540 | GenBank | NZ_RRDI01000209 |
| Plasmid name | FWSEC0034|unnamed10 | Incompatibility group | Col440I |
| Plasmid size | 3513 bp | Coordinate of oriT [Strand] | 2307..2589 [-] |
| Host baterium | Escherichia coli strain FWSEC0034 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |