Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 101051 |
| Name | oriT_Ea01-03|pEA4.0  |
| Organism | Erwinia amylovora strain Ea01-03 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_JAAEWH010000068 (2692..2751 [-], 60 nt) |
| oriT length | 60 nt |
| IRs (inverted repeats) | _ |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 60 nt
>oriT_Ea01-03|pEA4.0
GGGTTTCGGGGCGCAGCCCTGAACCAGTCACGTAGCGCTAGCGGAGTGTATACTGGCTTA
GGGTTTCGGGGCGCAGCCCTGAACCAGTCACGTAGCGCTAGCGGAGTGTATACTGGCTTA
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 1102 | GenBank | WP_240152699 |
| Name | Relaxase_HG665_RS18515_Ea01-03|pEA4.0 |
UniProt ID | _ |
| Length | 388 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 388 a.a. Molecular weight: 43625.18 Da Isoelectric Point: 8.6726
>WP_240152699.1 relaxase/mobilization nuclease domain-containing protein [Erwinia amylovora]
MIVKFHPRGRGGGAGPVDYLLGKDRQRDGASLLQGKPEEVRELIDASPYAKKYTSGVLSFAENDLPPGQR
EKLMASFERVLMPGLDKDQYSVLWVEHRDKGRLELNFLIPNTELLTGRRLQPYYDRADRPRIDAWQTIVN
GRLGLHDPNAPENRRALVTPSALPEAKQEAAQAITRGLLALASSGELKTRQDVTEALESAGFEVVRTTKS
SISIADPDGGRNIRLKGAIYEQSFNAGEGLRAEIESAAADYRRDAESRIQRAREVCKSGTERKREENQRR
HSRPRPEAVLSHEPADESQTWLTIVLVSVLLIASSAGILWWQGQQMLDNYTSIREQKDALEKLNARTWGV
RYQEDNQGRFLVLPEGVKADTNWTFDNGMKIGIRLVRE
MIVKFHPRGRGGGAGPVDYLLGKDRQRDGASLLQGKPEEVRELIDASPYAKKYTSGVLSFAENDLPPGQR
EKLMASFERVLMPGLDKDQYSVLWVEHRDKGRLELNFLIPNTELLTGRRLQPYYDRADRPRIDAWQTIVN
GRLGLHDPNAPENRRALVTPSALPEAKQEAAQAITRGLLALASSGELKTRQDVTEALESAGFEVVRTTKS
SISIADPDGGRNIRLKGAIYEQSFNAGEGLRAEIESAAADYRRDAESRIQRAREVCKSGTERKREENQRR
HSRPRPEAVLSHEPADESQTWLTIVLVSVLLIASSAGILWWQGQQMLDNYTSIREQKDALEKLNARTWGV
RYQEDNQGRFLVLPEGVKADTNWTFDNGMKIGIRLVRE
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Auxiliary protein
| ID | 399 | GenBank | WP_176703084 |
| Name | WP_176703084_Ea01-03|pEA4.0 |
UniProt ID | _ |
| Length | 107 a.a. | PDB ID | _ |
| Note | Predicted by oriTfinder 2.0 | ||
Auxiliary protein sequence
Download Length: 107 a.a. Molecular weight: 11762.60 Da Isoelectric Point: 7.2165
>WP_176703084.1 MobC family plasmid mobilization relaxosome protein [Erwinia amylovora]
MLTMWVTEDEHRRLLERCEGKQLAAWMRQTCLDEKPAKAGKLPSISPALLRQLAGMGNNLNQIARQVNAA
GGTGHDRVQVMAALMAIDAGLERLRHAVLEKDAADDC
MLTMWVTEDEHRRLLERCEGKQLAAWMRQTCLDEKPAKAGKLPSISPALLRQLAGMGNNLNQIARQVNAA
GGTGHDRVQVMAALMAIDAGLERLRHAVLEKDAADDC
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 1495 | GenBank | NZ_JAAEWH010000068 |
| Plasmid name | Ea01-03|pEA4.0 | Incompatibility group | ColRNAI |
| Plasmid size | 4068 bp | Coordinate of oriT [Strand] | 2692..2751 [-] |
| Host baterium | Erwinia amylovora strain Ea01-03 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |