Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 100987 |
| Name | oriT_pN3-7A-1  |
| Organism | Alcanivorax sp. N3-2A |
| Sequence Completeness | intact |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP022308 (41083..41188 [-], 106 nt) |
| oriT length | 106 nt |
| IRs (inverted repeats) | 55..73, 76..94 (GTGAAGAAGGACAACCCGC..GCGGGTGGGCCTACTTCAC) |
| Location of nic site | 102..103 |
| Conserved sequence flanking the nic site |
CATCCTG|C |
| Note | predicted by the oriTfinder |
oriT sequence
Download Length: 106 nt
>oriT_pN3-7A-1
CAGCCTCGCAGAGCAGGATTTCCGTTGAGCACCGCCAGGTGCGAATAAGGGCAAGTGAAGAAGGACAACCCGCTTGCGGGTGGGCCTACTTCACACATCCTGCCCG
CAGCCTCGCAGAGCAGGATTTCCGTTGAGCACCGCCAGGTGCGAATAAGGGCAAGTGAAGAAGGACAACCCGCTTGCGGGTGGGCCTACTTCACACATCCTGCCCG
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 1057 | GenBank | WP_089031315 |
| Name | TrbI_pN3-7A-1 |
UniProt ID | _ |
| Length | 598 a.a. | PDB ID | |
| Note | putative relaxase | ||
Relaxase protein sequence
Download Length: 598 a.a. Molecular weight: 65652.37 Da Isoelectric Point: 10.4572
>WP_089031315.1 TraI/MobA(P) family conjugative relaxase [Alcanivorax sp. N3-2A]
MIAKHIAMRSLGKSDFAGLVSYVTDAQSKDHRLGQVQITNCDAVSVQDAITEILATQHSNTRAKGDKTYH
LIVSFRAGEQPSADTLRAIEERICAGLGYGEHQRVSAVHNDTDNLHIHIAINKIHPARHTMHEPYYPHLA
LADLCTALEREYGLEPDNHQSHQRGAASRAADMERHAGVDSLVGWIKRECLEEIKAAQSWAELHQVMRDN
SLEMTPRGNGLVIRADDGTMVKPSTVARELSKPALERRLGAFEAPPEWVERKQAKREYQKKPVRSRADTT
ELYARYKDEQKNLTVARAEALAAAKRRKDRAVAHAKQKAVTKRAAIKLAGGGKVSKKLLYSQTSATLRAE
LDGIHKAYAREREWLFDGHQRRQWVDWLKHEATQGNSEALAALRAREAAQGLKGNTLAAQGEAKPGHAPV
IDNITKKGTIIYRAGQSAVRDDGDRLQVSTGADRAGVLEALRLAAERYGDRITVNGTTEFKAQAIRAAVD
GRLTITFADSALEKRRQALLQDNFSATRKPGVPGVGKAPPPAARAGRLRSLAQAEALQIEGAAAAVTPQR
PAVALTPASSELARRKAKLQAELSAKKERTNQRKGRGR
MIAKHIAMRSLGKSDFAGLVSYVTDAQSKDHRLGQVQITNCDAVSVQDAITEILATQHSNTRAKGDKTYH
LIVSFRAGEQPSADTLRAIEERICAGLGYGEHQRVSAVHNDTDNLHIHIAINKIHPARHTMHEPYYPHLA
LADLCTALEREYGLEPDNHQSHQRGAASRAADMERHAGVDSLVGWIKRECLEEIKAAQSWAELHQVMRDN
SLEMTPRGNGLVIRADDGTMVKPSTVARELSKPALERRLGAFEAPPEWVERKQAKREYQKKPVRSRADTT
ELYARYKDEQKNLTVARAEALAAAKRRKDRAVAHAKQKAVTKRAAIKLAGGGKVSKKLLYSQTSATLRAE
LDGIHKAYAREREWLFDGHQRRQWVDWLKHEATQGNSEALAALRAREAAQGLKGNTLAAQGEAKPGHAPV
IDNITKKGTIIYRAGQSAVRDDGDRLQVSTGADRAGVLEALRLAAERYGDRITVNGTTEFKAQAIRAAVD
GRLTITFADSALEKRRQALLQDNFSATRKPGVPGVGKAPPPAARAGRLRSLAQAEALQIEGAAAAVTPQR
PAVALTPASSELARRKAKLQAELSAKKERTNQRKGRGR
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 1445 | GenBank | NZ_CP022308 |
| Plasmid name | pN3-7A-1 | Incompatibility group | _ |
| Plasmid size | 427202 bp | Coordinate of oriT [Strand] | 41083..41188 [-] |
| Host baterium | Alcanivorax sp. N3-2A |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | copper resistance |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |