Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   100986
Name   oriT_pAMT3 in_silico
Organism   Staphylococcus epidermidis strain AMT
Sequence Completeness      intact
NCBI accession of oriT (coordinates [strand])   NZ_CP022251 (2551..2788 [+], 238 nt)
oriT length   238 nt
IRs (inverted repeats)      IR1: 52..58, 62..68  (TTGGGGA..TCCCCAA)
  IR2: 94..98, 104..108  (TGGCT..AGCCA)
Location of nic site      115..116
Conserved sequence flanking the
  nic site    		  TGCTTG|CCA
Note   predicted by the oriTfinder

  oriT sequence  


Download         Length: 238 nt

>oriT_pAMT3
AGTGGCTAGCAATTAGCCACTTATTTTTTCGCAGAAAAAATCCTAAGGGGCTTGGGGATATTCCCCAACAAGCAGGCGTCGCTACCACGTGAGTGGCTAGCAAAGCCAGTGCTTGCCAAACCACTTAACGACTTGATTAATTTTGCTTTACCCTGTAAAGTAAAATTATATTAAGGAGTTATCTTTCGTAGAAAGCGTGGTGGGATGTATGAGCGAACAAAACACATTTGTGGCTAGC

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   1056 GenBank   WP_088922916
Name   Rlx_pAMT3 insolico UniProt ID   _
Length   336 a.a. PDB ID   
Note   putative relaxase

  Relaxase protein sequence


Download         Length: 336 a.a.        Molecular weight: 38502.27 Da        Isoelectric Point: 6.8282

>WP_088922916.1 MULTISPECIES: relaxase/mobilization nuclease domain-containing protein [Staphylococcus]
MATTKLSATKSTSRAINYAEKRAVEKSGLNCDVDYAKSSFKASRELYGKTDGNQGHVIIQSFQPGEVTPE
QCNQLGLALAEKLTPNHQVAVYTHADTDHVHNHIVINSIDLETGKKFNNNKQALRNVRNFNDEVCMEHGL
SVPEKDTARLRYTQTEKAIADPNTKSTAQYSWKDEIREAIDQSQATNMDEFKDHLNQHGIELERVTPKSI
TYRHLAEDKKVRGRKLGEDYNKGGIEDGFERQIQRRKQQERDSDTEFQPKRPTSNRDEATERDTGVTQSD
WDQFAQDTNELERSRQAAESARLAHEKARRDREERERAKQASRTIINDHRDHGLEL

  Protein domains


Predicted by InterproScan.

Relaxase/Mobilisation nuclease domain (Relaxase)

(9-242)


  Protein structure



No available structure.




Host bacterium

ID   1444 GenBank   NZ_CP022251
Plasmid name   pAMT3 Incompatibility group   _
Plasmid size   7554 bp Coordinate of oriT [Strand]   2551..2788 [+]
Host baterium   Staphylococcus epidermidis strain AMT

Cargo genes

Drug resistance gene   vga(A)LC
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -