Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 100980 |
| Name | oriT_p1315K-1  |
| Organism | Salmonella enterica subsp. salamae serovar 55:k:z39 str. 1315K |
| Sequence Completeness | intact |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP022140 (62236..62324 [-], 89 nt) |
| oriT length | 89 nt |
| IRs (inverted repeats) | IR1: 16..23, 27..34 (GTCGGGGC..GCCCTGAC) IR2: 41..58, 61..78 (GTAAATGTATGGCCGCGC..GCGCGGTTATACATTTAC) |
| Location of nic site | 86..87 |
| Conserved sequence flanking the nic site |
CATCCTG|T |
| Note | predicted by the oriTfinder |
oriT sequence
Download Length: 89 nt
>oriT_p1315K-1
GCTCCTTACCGGGGTGTCGGGGCGAAGCCCTGACCAGGTGGTAAATGTATGGCCGCGCGTGCGCGGTTATACATTTACACATCCTGTCC
GCTCCTTACCGGGGTGTCGGGGCGAAGCCCTGACCAGGTGGTAAATGTATGGCCGCGCGTGCGCGGTTATACATTTACACATCCTGTCC
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 1050 | GenBank | WP_080227073 |
| Name | NikB_p1315K-1 |
UniProt ID | _ |
| Length | 899 a.a. | PDB ID | |
| Note | putative relaxase | ||
Relaxase protein sequence
Download Length: 899 a.a. Molecular weight: 104272.82 Da Isoelectric Point: 7.3169
>WP_080227073.1 IncI1-type relaxase NikB [Salmonella enterica]
MNGIIPKKRRDGKSSFEDLVSYVSVRDDLEDEELQALSSVQSLLSHRSRFSRLVDHATRLRDESFVSLVD
VMKDGCEWVNFYGVTCFHNCTSLETAAEEMEYTARQARYAKDDTDPVFHYILSWQSHESPRPEQIYDSVR
HTLKALGLSSHQYVSAVHTDTDNLHVHVAVNRVHPDTGYLNCLSWSQEKLSRACRELELKHGFAPDNGCW
IHAPGCRIVRKTAAERDRQNAWTRGKKQTFREYVSQTAVAGLRSEPVHDWLSLHRRLAEDGLYLTLQNGS
FMVMDGWDRSREGVQLDSFGPSWNGDKLRKKMGEYTPVPKDIFSQVGAPGRYKPEVIAADTRPEKMAETV
NLMQYACRHLGDRLPEMAREGKLESCLDIHRTLAEAGLWMRIQHGHLVICDGSDHNQTPVRADSVWPLLT
PENVNQLDGGWQPVPDDIFRQVTPAERFSGRRLESCPASDREWHRMRTGPGPQGAIRRELFSDKESLWGY
SISHCSPQIEEMITRGEFTWHHCHELFARQGLMLQRQHHGLVVVDAFNHEQTPVKASSIHPDLTLERAEP
QAGPFVSAPADLFDRVKPESRYNPELAVSDQSPEDCRRDPVLRRQRREARAEARAELRARYLAWREHWRK
PELRYGERSREIHQACRLRKSHIRVQYDDPVLRKLHYHIAEVQRMQALIRLKEEVRDERQKLIAEGKWYP
PSYRQWVKAQAVQGDRAAVSQLRGWDYRDRRKDKSRTTTADRCVILCEPGGTPVYENRGDLEARLQKNGS
VRFRDRRTDQFVCTDYGDRVVFHNHHDRNELADKLDLIAPVLFERDPRMGFEPEGNDRQFNQVFAEMVAW
HNVTERTGHGDYTISRPDVDHHREGSERYYRSYINAHAGCDRAPRFQEDEKGWEPPTPV
MNGIIPKKRRDGKSSFEDLVSYVSVRDDLEDEELQALSSVQSLLSHRSRFSRLVDHATRLRDESFVSLVD
VMKDGCEWVNFYGVTCFHNCTSLETAAEEMEYTARQARYAKDDTDPVFHYILSWQSHESPRPEQIYDSVR
HTLKALGLSSHQYVSAVHTDTDNLHVHVAVNRVHPDTGYLNCLSWSQEKLSRACRELELKHGFAPDNGCW
IHAPGCRIVRKTAAERDRQNAWTRGKKQTFREYVSQTAVAGLRSEPVHDWLSLHRRLAEDGLYLTLQNGS
FMVMDGWDRSREGVQLDSFGPSWNGDKLRKKMGEYTPVPKDIFSQVGAPGRYKPEVIAADTRPEKMAETV
NLMQYACRHLGDRLPEMAREGKLESCLDIHRTLAEAGLWMRIQHGHLVICDGSDHNQTPVRADSVWPLLT
PENVNQLDGGWQPVPDDIFRQVTPAERFSGRRLESCPASDREWHRMRTGPGPQGAIRRELFSDKESLWGY
SISHCSPQIEEMITRGEFTWHHCHELFARQGLMLQRQHHGLVVVDAFNHEQTPVKASSIHPDLTLERAEP
QAGPFVSAPADLFDRVKPESRYNPELAVSDQSPEDCRRDPVLRRQRREARAEARAELRARYLAWREHWRK
PELRYGERSREIHQACRLRKSHIRVQYDDPVLRKLHYHIAEVQRMQALIRLKEEVRDERQKLIAEGKWYP
PSYRQWVKAQAVQGDRAAVSQLRGWDYRDRRKDKSRTTTADRCVILCEPGGTPVYENRGDLEARLQKNGS
VRFRDRRTDQFVCTDYGDRVVFHNHHDRNELADKLDLIAPVLFERDPRMGFEPEGNDRQFNQVFAEMVAW
HNVTERTGHGDYTISRPDVDHHREGSERYYRSYINAHAGCDRAPRFQEDEKGWEPPTPV
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 1438 | GenBank | NZ_CP022140 |
| Plasmid name | p1315K-1 | Incompatibility group | IncFIB |
| Plasmid size | 109681 bp | Coordinate of oriT [Strand] | 62236..62324 [-] |
| Host baterium | Salmonella enterica subsp. salamae serovar 55:k:z39 str. 1315K |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | faeI, faeH, faeF, faeE, faeD, faeC |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |