Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   100952
Name   oriT_pWSM1497 in_silico
Organism   Mesorhizobium sp. WSM1497
Sequence Completeness      core
NCBI accession of oriT (coordinates [strand])   NZ_CP021071 (273432..273465 [-], 34 nt)
oriT length   34 nt
IRs (inverted repeats)      19..24, 28..33  (ACGTCG..CGACGT)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   predicted by the oriTfinder

  oriT sequence  


Download         Length: 34 nt

>oriT_pWSM1497
GAGGGAGGGCGCGCTTATACGTCGTGCCGACGTG

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   1022 GenBank   WP_064994117
Name   TraA_pWSM1497 insolico UniProt ID   A0A1W6XHL5
Length   1015 a.a. PDB ID   
Note   putative relaxase

  Relaxase protein sequence


Download         Length: 1015 a.a.        Molecular weight: 111959.76 Da        Isoelectric Point: 6.8053

>WP_064994117.1 Ti-type conjugative transfer relaxase TraA [Mesorhizobium sp. WSM1497]
MAIYHLHVKVIGRKAGSSAVASAAYRSASRLRAERIDRTHNFSAKRGVVHSEVMLPENAPEAWRDRERLW
NDVEAFEVRKDAQLAREVEFALPRELSQAQGIELARDFVEAEFVSRGMVADLNVHWDRAEDGSPKPHAHV
ILTMRAVDANGFGSKVRDWNATQLVERWRERWAELANERLAELDIDARIDHRSLEAQGIALEPQTQIGAP
AQRIEGSGLAAGDSEADRAELHREIARNNGARIIADPSVALDAITHQQSTFTRKDIAKFSHRHSDGMEQF
NEVVVAISNAPDLVELGKDGRGEDRFTTRQMIETEQRLHRAAERIDLDERHAVSDAHREAALARAAQRGL
ILSEEQSDALAHITDGRGLGVVVGFAGTGKSAMLGVARQAWAAAGYEVRGAALSGIAAENLESGSGIPSR
TIASMEHGWGQGRDLLTARDVLVIDEAGMVGTRQLERVLSHAADAGAKVVLVGDPQQLQAIEAGAAFRSI
HERHGGVEIGQVRRQSEDWQRDATRDLATGRIGAAISAYDAQGMVHHAATRDAARSELVERWDRDRQAHP
EASRIILTHTNDEVRALNQAARERMRAAGDLGEDVQVNVERGPRNFASGDRVMFLRNERGLGVKNGTLGI
VEEVSTQSIAVRTDDDRSVRFDLKDYAHIDHGYAATIHKAQGMTVARTHVLATPGMDAHGSYVALSRHRD
RMELHYGGDDFANRERLVRTLSRNRAKDMASDYEQIDPAQSYAERRGITFRERVVEIVRRIVPEKLRDRI
GEFLDGLRSPADAEPGNDRGRGPERENVGALSADGGAAPERDVSVRGAQRDTDAAVSPEAALRRARTNAL
VRHARAIDAILSSGNVDGQGSPEQMRELRDARSAFEKVRPHGWRDAEAAYVKNPELLREAGAGRVNRIVL
ALQLETEIRTGLDSDPAGRAERFVEHWQKLHRTSQDQYQAGDMSGYKSTRLAMSNMAKSLERDPQLESLL
ANRKRELGINVESGRRFGAELAFNHGIGRGRGIGI

  Protein domains


Predicted by InterproScan.

AAA domain (AAA_30)

(352-538)

MobA/MobL family (MobA_MobL)

(18-215)


  Protein structure



No available structure.




Host bacterium

ID   1410 GenBank   NZ_CP021071
Plasmid name   pWSM1497 Incompatibility group   _
Plasmid size   531629 bp Coordinate of oriT [Strand]   273432..273465 [-]
Host baterium   Mesorhizobium sp. WSM1497

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -