Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 100948 |
| Name | oriT_pVISLISI_2  |
| Organism | Staphylococcus lugdunensis strain VISLISI_27 |
| Sequence Completeness | intact |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP020736 (3648..3886 [+], 239 nt) |
| oriT length | 239 nt |
| IRs (inverted repeats) | IR1: 52..59, 61..68 (TTGGGGAT..ATCCCCAA) IR2: 94..98, 104..108 (TGGCT..AGCCA) |
| Location of nic site | 115..116 |
| Conserved sequence flanking the nic site |
TGCTTG|CCA |
| Note | predicted by the oriTfinder |
oriT sequence
Download Length: 239 nt
>oriT_pVISLISI_2
AGTGGCTAGCAATTAGCCACTATTTTTTCGTCAGAAAAAATCCTAAGGGGCTTGGGGATTATCCCCAACAAGCAGGCGACGCTACCACGTTAGTGGCTAGCAAAGCCAATGCTTGCCAAACCACTTAACGACTTGATGAATTTTACTTTATCCTATAAAGTAAAATGTAAGAAAGGCGTTATCTTTCGAAGAAAGCGTGGTGGGATTGAATGAGCGAACAAAACACATTTGTGGCTAGC
AGTGGCTAGCAATTAGCCACTATTTTTTCGTCAGAAAAAATCCTAAGGGGCTTGGGGATTATCCCCAACAAGCAGGCGACGCTACCACGTTAGTGGCTAGCAAAGCCAATGCTTGCCAAACCACTTAACGACTTGATGAATTTTACTTTATCCTATAAAGTAAAATGTAAGAAAGGCGTTATCTTTCGAAGAAAGCGTGGTGGGATTGAATGAGCGAACAAAACACATTTGTGGCTAGC
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 1018 | GenBank | WP_084944766 |
| Name | Rlx_pVISLISI_2 |
UniProt ID | _ |
| Length | 336 a.a. | PDB ID | |
| Note | putative relaxase | ||
Relaxase protein sequence
Download Length: 336 a.a. Molecular weight: 38612.44 Da Isoelectric Point: 6.8839
>WP_084944766.1 relaxase/mobilization nuclease domain-containing protein [Staphylococcus lugdunensis]
MATTKISATKSTSRAINYAEKRAVEKSGLNCDVDYAKSSFKATRELYDKTDGNQGHVIIQSFKPGEVTPE
QCNQLGLELAEKLAPNHQVAVYTHNDTDHVHNHIVINSIDLETGLKFNNNKQALRNVRDFNDEVCMKHGL
SVPEKDTARLRYTQTEKAIADPNTKSTAQYSWKDKIREAIDQSQATNMDEFKDHLNQHGIEIERVTPKSI
TYRHLAEDKKVRGRKLGEDYNKGGIEDGFERQIQRRRQQERDSDTECQPKRPTSSRDESTERDTGVTQSD
WDQFAQDTNELERSRQAAESARLADEKARRDREERERAKQASRRIINNDRDHGLEL
MATTKISATKSTSRAINYAEKRAVEKSGLNCDVDYAKSSFKATRELYDKTDGNQGHVIIQSFKPGEVTPE
QCNQLGLELAEKLAPNHQVAVYTHNDTDHVHNHIVINSIDLETGLKFNNNKQALRNVRDFNDEVCMKHGL
SVPEKDTARLRYTQTEKAIADPNTKSTAQYSWKDKIREAIDQSQATNMDEFKDHLNQHGIEIERVTPKSI
TYRHLAEDKKVRGRKLGEDYNKGGIEDGFERQIQRRRQQERDSDTECQPKRPTSSRDESTERDTGVTQSD
WDQFAQDTNELERSRQAAESARLADEKARRDREERERAKQASRRIINNDRDHGLEL
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 1406 | GenBank | NZ_CP020736 |
| Plasmid name | pVISLISI_2 | Incompatibility group | _ |
| Plasmid size | 6453 bp | Coordinate of oriT [Strand] | 3648..3886 [+] |
| Host baterium | Staphylococcus lugdunensis strain VISLISI_27 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |