Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 100945
• Name: oriT_pFDAARGOS_205-2
• Organism: Neisseria gonorrhoeae strain FDAARGOS_205
• Sequence Completeness: incomplete
• NCBI accession of oriT (coordinates [strand]): NZ_CP020417 (5770..5824 [+], 55 nt)
• oriT length: 55 nt
• IRs (inverted repeats): IR1: 16..24, 28..36 (CAGTTTCTC..GAGAAACTG) IR2: 43..47, 51..55 (AAGCG..CGCTT)
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: predicted by the oriTfinder

oriT sequence

• Length: 55 nt

>oriT_pFDAARGOS_205-2
GTAATGCCCACTTATCAGTTTCTCTTCGAGAAACTGGTGGGCAAGCGTACCGCTT

oriT secondary structure

Predicted by RNAfold.

Relaxase

Mob_pFDAARGOS_205-2

• ID: 1015
• GenBank: WP_032490546
• Name: Mob_pFDAARGOS_205-2
• UniProt ID: Q84AT6
• Length: 478 a.a.
• Note: putative relaxase

Relaxase protein sequence

• Length: 478 a.a.
• Molecular weight: 56206.84 Da
• Isoelectric Point: 8.1947

>WP_032490546.1 MULTISPECIES: MobA/MobL family protein [Pseudomonadota]
MAIYHLNVRYCSKSKGQSAQAKNDYINRNDKYSKRLDDLQFSGYGNMPKFAEDNPQEFWRLSDIYERANA
RVCTEIEFALPRELTLEQQQKLVSSFIENTVDSGSNKLPYSFAIHTDKNNHNPHCHLIFSERQLDGIDRT
AEQFFKRANTKSPEKGGAMKTADFRDREFIQSVRKTWREQANQALEQYGYAARIDERSYKEQGIEQAPRA
RIDRVTWQELNRLEQEERQIVQELALKGQEINKEKSYLQKIEEKQAQGMGKYESKFAAAFSKLSESALKH
DLSNEKEKDSKIHTQEEKVPQNRIQGLSQADFDQFLIDEWLPQIEKYVKAQEKRDGMEVEITQYDKDLQR
IQGDYNKLTDKNQGFLGLWETKEQKAKKKELEDEYKHTAEQRNAKSQELAEYSQKIKAYEQKTLEPINEK
IAKYQADNPEIKMRSLGFVKKIKAQGAYKAAQERMEREKQHQQEKQQRHLERESGLSL

Protein domains

Predicted by InterproScan.

• MobA/MobL family (MobA_MobL) (23-211)

Protein structure

• AlphaFold DB: Q84AT6

Host bacterium

• ID: 1403
• GenBank: NZ_CP020417
• Plasmid name: pFDAARGOS_205-2
• Incompatibility group: _
• Plasmid size: 7450 bp
• Coordinate of oriT [Strand]: 5770..5824 [+]
• Host baterium: Neisseria gonorrhoeae strain FDAARGOS_205

Cargo genes

• Drug resistance gene: blaTEM-1B
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -