Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   100885
Name   oriT_pKp_Goe_917-5 in_silico
Organism   Klebsiella pneumoniae strain Kp_Goe_822917
Sequence Completeness      intact
NCBI accession of oriT (coordinates [strand])   NZ_CP018444 (3776..3952 [+], 177 nt)
oriT length   177 nt
IRs (inverted repeats)      5..12, 16..23  (TTCGGGGC.. GCCCTGAA)
Location of nic site      56..57
Conserved sequence flanking the
  nic site    		  CTGG|CTTA
Note   predicted by the oriTfinder

  oriT sequence  


Download         Length: 177 nt

>oriT_pKp_Goe_917-5
GGGTTTCGGGGCGCAGCCCTGAACCAGTCACGTAGCGCTAGCGGAGTGTATACTGGCTTAGTATGTTACGGCGAGATGGAGATTCGGGGAAGTGCTTCATGTGGCAAGGGGGAAAATACGGCTGCGGGGCGTAAGTGCAAAATGCAGGTAACGATGAAATGACGCCTCCTCGCTCAC

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   956 GenBank   WP_073545626
Name   Nuclease_pKp_Goe_917-5 insolico UniProt ID   _
Length   508 a.a. PDB ID   
Note   putative relaxase

  Relaxase protein sequence


Download         Length: 508 a.a.        Molecular weight: 55539.27 Da        Isoelectric Point: 5.3947

>WP_073545626.1 MULTISPECIES: relaxase/mobilization nuclease domain-containing protein [Klebsiella]
MIVKFHPRGRGGGAGPVDYLLGKDRQREGASVLQGKPEEVRELIDASPYVKKYTSGVLSFAEADLPPGQR
EKLMASFERVLMPGLDKDQYSILWVEHADKGRLELNFLIPNTELLTGKRLQPYYDRADRPRIDAWQTVVN
GRLGLHDPNDPENRRALVTPSGLPETKQEAAETITRGLLMLASSGELKTRDDVTGALTAAGFEVVRTTKN
SISIADPDGGRNIRLRGAIYEQSFNGLEGLRGEIESTAAAYRREAESRIQQARERCQIGTERKREENQRR
HQRPRTGDERGDAVEPAERAANGRADVADHHHGVRAAVRQPERGAVVPGEPDSGEPGGNQAAERYAVETA
HADVGRDLSGEPQRTVSGAAGGDESRNGPDGGQQDAERGEAGTGVEQNDGTGKTIVERVRAATAGLLEKA
GRVGERLRGMAEDVWSYATGERGAERARVGLEQAGAEFERAAAPVIDRLNEIEQQRYGQTTEKEPEKTAD
LVPERQRTLSHGDREYGD

  Protein domains


Predicted by InterproScan.

Relaxase/Mobilisation nuclease domain (Relaxase)

(57-236)


  Protein structure



No available structure.




Host bacterium

ID   1344 GenBank   NZ_CP018444
Plasmid name   pKp_Goe_917-5 Incompatibility group   Col440II
Plasmid size   5234 bp Coordinate of oriT [Strand]   3776..3952 [+]
Host baterium   Klebsiella pneumoniae strain Kp_Goe_822917

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -