Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   100883
Name   oriT_pCAV1752-3851 in_silico
Organism   Klebsiella oxytoca strain CAV1752
Sequence Completeness      intact
NCBI accession of oriT (coordinates [strand])   NZ_CP018357 (3018..3203 [-], 186 nt)
oriT length   186 nt
IRs (inverted repeats)      15..22, 26..33  (TTCGGGGC..GCCCTGAA)
Location of nic site      66..67
Conserved sequence flanking the
  nic site    		  CTGG|CTTA
Note   predicted by the oriTfinder

  oriT sequence  


Download         Length: 186 nt

>oriT_pCAV1752-3851
GGTTTTTAGCGGGTTTCGGGGCGCAGCCCTGAACCAGTCACGTAGCGCTAGCGGAGTGTATACTGGCTTAATATGATAAATCGAAGTGGTAATTCGGGAAAGTGCTTCATGTGGCAGGGGAAAAATTCAGCTGCGGGGCGTAAGTGCAAAATGCAGGTGGTGATGACATGACGCCTCCTCGCTCAC

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   954 GenBank   WP_074184816
Name   Nuclease_pCAV1752-3851 insolico UniProt ID   _
Length   508 a.a. PDB ID   
Note   putative relaxase

  Relaxase protein sequence


Download         Length: 508 a.a.        Molecular weight: 55516.28 Da        Isoelectric Point: 5.4025

>WP_074184816.1 MULTISPECIES: relaxase/mobilization nuclease domain-containing protein [Klebsiella]
MIVKFHPRGRGGGAGPVDYLLGKDRQREGASVLQGKPEEIRELIDASPYVKKYTSGVLSFAEADLPPGQR
EKLMASFERVLMPGLDKDQYSILWVEHADKGRLELNFLIPNTELLTGKRLQPYYDRADRPRIDAWQTVVN
GRLGLHDPNDPENRRALVTPSGLPETKQEAAETITRGLLMLASSGELKTRDDVTGALTAAGFEVVRTTKN
SISIADPDGGRNIRLRGAIYEQSFNGLEGLRGEIESTAAAYRREAESRIQQARERCQIGTERKREENQRR
HQRPRTGDERGDAVEPAERAANGRADVADHHHGVRAAVRQPERGAVVPGEPDSGEPGGNQAAERYAVETA
DADVGRDLSGKPQRTVSGAAGGDESRNGPEGGQQDAERGEAGTGVEQNDGTGKTIAERVRAATAGLLEKA
GRVGERLRGMAEDVWSYATGERGAERARVGLEQAGAEFERAAAPVIDRLNEIEQQRYGQTTEKEPEKTAD
LVPERQRTLSHGDREYGD

  Protein domains


Predicted by InterproScan.

Relaxase/Mobilisation nuclease domain (Relaxase)

(57-236)


  Protein structure



No available structure.




Host bacterium

ID   1342 GenBank   NZ_CP018357
Plasmid name   pCAV1752-3851 Incompatibility group   Col440I
Plasmid size   3851 bp Coordinate of oriT [Strand]   3018..3203 [-]
Host baterium   Klebsiella oxytoca strain CAV1752

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -