Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 100855 |
| Name | oriT_pCFSAN017963_02  |
| Organism | Salmonella enterica subsp. enterica serovar Minnesota strain CFSAN017963 |
| Sequence Completeness | intact |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP017722 (7085..7167 [-], 83 nt) |
| oriT length | 83 nt |
| IRs (inverted repeats) | 3..12, 16..25 (GTGTCGGGGC..GCCATGACCC) |
| Location of nic site | 56..57 |
| Conserved sequence flanking the nic site |
CTGG|CTTA |
| Note | predicted by the oriTfinder |
oriT sequence
Download Length: 83 nt
>oriT_pCFSAN017963_02
GGGTGTCGGGGCGCAGCCATGACCCAGTCACGTAGCGATAGCGGAGTGTATACTGGCTTAACTCTGAGGCATCAGTGCAGATT
GGGTGTCGGGGCGCAGCCATGACCCAGTCACGTAGCGATAGCGGAGTGTATACTGGCTTAACTCTGAGGCATCAGTGCAGATT
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 927 | GenBank | WP_088137336 |
| Name | MobC_pCFSAN017963_02 |
UniProt ID | _ |
| Length | 81 a.a. | PDB ID | |
| Note | putative relaxase | ||
Relaxase protein sequence
Download Length: 81 a.a. Molecular weight: 8981.35 Da Isoelectric Point: 11.2230
>WP_088137336.1 MobC family plasmid mobilization relaxosome protein [Salmonella enterica]
MRRVCLGEPVARSGKLPTLAPPLLRQLAAIGNNLNQTARKVNSGQWSSCDRVQVVAALMAIERELRSLRQ
VVREQGERDDS
MRRVCLGEPVARSGKLPTLAPPLLRQLAAIGNNLNQTARKVNSGQWSSCDRVQVVAALMAIERELRSLRQ
VVREQGERDDS
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 1315 | GenBank | NZ_CP017722 |
| Plasmid name | pCFSAN017963_02 | Incompatibility group | ColRNAI |
| Plasmid size | 7665 bp | Coordinate of oriT [Strand] | 7085..7167 [-] |
| Host baterium | Salmonella enterica subsp. enterica serovar Minnesota strain CFSAN017963 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |