Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   100848
Name   oriT_pRgalIE4872a in_silico
Organism   Rhizobium gallicum strain IE4872
Sequence Completeness      core
NCBI accession of oriT (coordinates [strand])   NZ_CP017103 (166705..166749 [+], 45 nt)
oriT length   45 nt
IRs (inverted repeats)      23..28, 33..38  (CGTCGC..GCGACG)
Location of nic site      12..13
Conserved sequence flanking the
  nic site    		  _
Note   predicted by the oriTfinder

  oriT sequence  


Download         Length: 45 nt

>oriT_pRgalIE4872a
GGATCCGAAGGGCGCAATTATACGTCGCTGACGCGACGCCCTTGC

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   920 GenBank   WP_074070644
Name   TraA_pRgalIE4872a insolico UniProt ID   A0A1L5NQB3
Length   1103 a.a. PDB ID   
Note   putative relaxase

  Relaxase protein sequence


Download         Length: 1103 a.a.        Molecular weight: 122207.01 Da        Isoelectric Point: 9.1621

>WP_074070644.1 Ti-type conjugative transfer relaxase TraA [Rhizobium gallicum]
MAVPHFSVSVVARGSGRSAVLSAAYRHCAKMEFEREARTIDYTRKQGLLHEEFVIPADAPEWLRSMIADR
SVSGASEAFWNRVEDFEKRSDAQLAKDVTIALPIELTAEQNIALVRDFVEQQITATGMVADWVYHDAPGN
PHVHLMTTLRPLTADGFGAKKVAATGPDGNPIRNDAGKIVYELWAGSIDDFNVFRDGWFACQNRHLALAG
LDIRVDGRSFEKQGIDLEPTIHLGVGTKAIERKADGAAQPIELERLELQDAKRSENVRRIDRNPELVLDL
IMREKSVFDERDVAKILHRYVDDAVLFQSLMVRILLCPETFRIERERLDLASGIREPAKYTTRDMIRLEA
EMANRAVWLSQRSTHGVREAVLAATFARHERLSDEQKTAIEHVAGPERIAAVIGRAGAGKTTMMKAAREA
WEAAGYRVVGAALAGKAAEGLEKEAGIISRTFASWELRWNQGRDQLDGKTVFVLDEAGMVSSRQMALFVE
AVTKAGAKLVLVGDPEQLQPIEAGAAFRAIADRIGYAELETIYRQRQQWMRDASLDLARGKVGSAVDAYR
ANGRVIGSDLKADAVDNLIAAWDRDYDPAKTSLILAHLRRDVRMLNQMARIKLIERGVLDQGTMFRTADG
ERNFAVGDQIVFLKNEGSLGVKNGMLARVVETGPGRITARIGEGEDARHVLVEQRFYNNLDHGYATTIHK
SQGATVDQVKVLASLSLDRHLTYVAMTRHREDLAVYYGRRSFAKNGGLIPILSRSNAKETTLDYENSAFY
RQALRFAEARGLHLVNVARTLVRDRLEWVVSQKQKLANLGARLAAVAGRLGLIRGAAQYLTQNNTKEPKP
MVSGITAFAKSVDQAIEDKVAVDPGLKKQWEEVSTRFHLVYAQPESAFKAVNVDAMLKDETVATSTLAKL
GSEPESFGALKGKTGILASRADKQEREKAQTNAPALARNLERYLRQRAEAERKFEVEERAVRLKVSIDIP
ALSPNAKQTLERVRDAIDRNDLPAGLEYALADKMVKAELEGFAKAVSDRFGERTFLSLAAQDPSGQTFNA
VTSGMTAGQKAEVQSAWNSMRTVQQLAAHERTTEALKQAETLRQTKSQGLSLK

  Protein domains


Predicted by InterproScan.

Viral (Superfamily 1) RNA helicase (Viral_helicase1)

(692-735)

AAA domain (AAA_30)

(382-567)

MobA/MobL family (MobA_MobL)

(17-243)

BID domain of Bartonella effector protein (Bep) (Bep_C_terminal)

(859-955)


  Protein structure


Source ID Structure
AlphaFold DB A0A1L5NQB3


Host bacterium

ID   1308 GenBank   NZ_CP017103
Plasmid name   pRgalIE4872a Incompatibility group   _
Plasmid size   176006 bp Coordinate of oriT [Strand]   166705..166749 [+]
Host baterium   Rhizobium gallicum strain IE4872

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -