Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   100844
Name   oriT_pNCI002 in_silico
Organism   Parageobacillus thermoglucosidasius strain TM242
Sequence Completeness      core
NCBI accession of oriT (coordinates [strand])   NZ_CP016918 (12520..12553 [-], 34 nt)
oriT length   34 nt
IRs (inverted repeats)      4..18, 22..34  (CCCATTTATACCCCT..AGGGGTAAATGGG)
Location of nic site      2..3nt
Conserved sequence flanking the
  nic site    		  _
Note   predicted by the oriTfinder

  oriT sequence  


Download         Length: 34 nt

>oriT_pNCI002
GTGCCCATTTATACCCCTTTCAGGGGTAAATGGG

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   916 GenBank   WP_042385886
Name   Nickase_pNCI002 insolico UniProt ID   _
Length   643 a.a. PDB ID   
Note   putative relaxase

  Relaxase protein sequence


Download         Length: 643 a.a.        Molecular weight: 75955.38 Da        Isoelectric Point: 9.6468

>WP_042385886.1 MobQ family relaxase [Parageobacillus thermoglucosidasius]
MAYFLFRTQIISKSNRSAVACAAYRSGEALYSERDGLTKKYGHRDVPPETYILAPKHAPEWVYNRERLWN
EVEKVEKQHNAQLAREIIVALPTQLTNEEQTQLLLDFCKENFADEGMVADIAIHRDKKHNPHAHIMLTMR
PFNEDGTWGKKRKKVNGKSVHLTNWNDKETLLKWRKNFADRINEKFKEKGIDDRVSHESYEKQGIDKVPQ
IRLSREAYQYEQRMKREAEKQGKPYEPVTYYGKLNQEIQRINQELKALKQKEKVVSISDYQEEKSLNETI
ESIRKNASLNDVEKASLLLVAKRAKTYVDFAVARRVYHDLAEGNWKKKIDSQQLKLRALKNVINKAYHVY
QQEPKQVIQYGFHPGKFNEQLREKIAQLKEMEKSFENELTKYEAVLKKAELALEVQKRLTEEEFRVLYPH
AGADFRIEEKYHAVQYFKDTGGVLPESDIPAYAAKKEQEIHRMPTFAEQTRNMYQSLFVLNRTIQKQSKE
RMEALKARDFEQAFEASRKIEQCMLRKEKMSKELEENKAVLQAILSEHYGRDVSITNTAALLRLHELVER
GESSKDLEADLRRIHVSEQQKLERMPKPETEAQIMEYQYRQHVADGLLEAIEEAQRANDRKKYEKDPTKK
RQRRRYRGQEFER

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(16-223)


  Protein structure



No available structure.




Host bacterium

ID   1304 GenBank   NZ_CP016918
Plasmid name   pNCI002 Incompatibility group   _
Plasmid size   47892 bp Coordinate of oriT [Strand]   12520..12553 [-]
Host baterium   Parageobacillus thermoglucosidasius strain TM242

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -