Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   100829
Name   oriT_pSA01AB09084001_4 in_silico
Organism   Salmonella enterica subsp. enterica serovar Heidelberg strain SA01AB09084001
Sequence Completeness      intact
NCBI accession of oriT (coordinates [strand])   NZ_CP016532 (601..774 [-], 174 nt)
oriT length   174 nt
IRs (inverted repeats)      2..11, 15..24  (GTTTCGGGGC..GCCCTGAACC)
Location of nic site      55..56
Conserved sequence flanking the
  nic site    		  CTGG|CTTA
Note   predicted by the oriTfinder

  oriT sequence  


Download         Length: 174 nt

>oriT_pSA01AB09084001_4
GGTTTCGGGGCGCAGCCCTGAACCAGTCACGTAGCGCTAGCGGAGTGTATACTGGCTTACTATGTTGGCACGGGTGCGGGAATCAGTGAAGCGCTTCATGTGGCAGGAGAAAAATGCAGCAGCGGAGCGTAAGCAGAATATATGAGACAGGATATATTCCGCTTCCTCGCTCAC

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   901 GenBank   WP_059476363
Name   PutativerelaxaseofpSA01AB09084001_4 insolico UniProt ID   _
Length   498 a.a. PDB ID   
Note   putative relaxase

  Relaxase protein sequence


Download         Length: 498 a.a.        Molecular weight: 55026.37 Da        Isoelectric Point: 8.4515

>WP_059476363.1 MULTISPECIES: relaxase/mobilization nuclease domain-containing protein [Enterobacteriaceae]
MIVKFHPRGRGGGAGPVDYLLGKDRQRDGATVLQGKPEEVRELIDASPYAKKYTSGVLSFAEKDLPPGQR
EKLMASFERVLMPGLDKDQYSVLWVEHQDKGRLELNFLIPNTELLTGRRLQPYYDRADRPRIDAWQTIVN
GRLGLHDPNAPENRRALVTPSALPETKQEAAQAITRGLLALASSGELKTRQDVTEALESAGFEVVRTTKS
SISIADPDGGRNIRLKGAIYEQSFNAGKGLRAEIESAAAEYRRDAESRIQRAREVCQSGTERKREENQRR
HPRPRPEAVLSHEPAHERHGAYGQPDVADHRPGVCTADSIGRKHSVVAGAADTRQLHDYPGAEAHAGHAV
REEQRRAALDLRRAETPLREGEPGSGTVRRGFELDDTGGEIAHDGAGKTVAERIRAATAGLLEKAGRVGE
RLRGMADDVWSYATGERGAERARHGLEQAGAEFERSAAPVVERLNSIEAHRQQERAAQHQKTLELERSQR
QKGFELGM

  Protein domains


Predicted by InterproScan.

Relaxase/Mobilisation nuclease domain (Relaxase)

(57-238)


  Protein structure



No available structure.




Host bacterium

ID   1289 GenBank   NZ_CP016532
Plasmid name   pSA01AB09084001_4 Incompatibility group   Col440I
Plasmid size   4245 bp Coordinate of oriT [Strand]   601..774 [-]
Host baterium   Salmonella enterica subsp. enterica serovar Heidelberg strain SA01AB09084001

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -