Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   100823
Name   oriT_pBSY18_4 in_silico
Organism   Blastomonas sp. RAC04
Sequence Completeness      core
NCBI accession of oriT (coordinates [strand])   NZ_CP016461 (27002..27035 [-], 34 nt)
oriT length   34 nt
IRs (inverted repeats)      17..22, 26..31  (ACGTCG..CGACGT)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   predicted by the oriTfinder

  oriT sequence  


Download         Length: 34 nt

>oriT_pBSY18_4
GGGAGGGCGCGCTTATACGTCGTGCCGACGTGCG

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   895 GenBank   WP_069052069
Name   TraA_pBSY18_4 insolico UniProt ID   A0A1B3NB15
Length   978 a.a. PDB ID   
Note   putative relaxase

  Relaxase protein sequence


Download         Length: 978 a.a.        Molecular weight: 107427.80 Da        Isoelectric Point: 8.8575

>WP_069052069.1 Ti-type conjugative transfer relaxase TraA [Blastomonas sp. RAC04]
MAIYHFSAKAISRAAGSSALAAAAYRAGERLHDDRLGRTHDFTNKAGVVHSEIMLPEGANEAWSDREKLW
NDVEASEVRKDAQLAREIEFALPREMTQQQAIELARDFVKAEFVDRGMIADLNVHWDIGADGEAKPHAHV
MLTMREIVVAEDGSTTFGPKVRDWNRTELLTHWREAWATHANQRMAELDIDARIDHRSLAAQGIDLEPQS
KIGAAASRMAGEGLSPERLAEHADIARSNGEKIIADPNIALNAITHQQATFTTRDLAMFAHRHSADKEQF
DAVMSAVKNAPDILALGKDGKGNDRFTSRDMIETEQRLERATIRLEARRSHAVPDRYREVALANAKARGM
DLSAEQRGALEHVTSAKGVSNVIGYAGTGKSAMLGVAREAWVRAGYTVQGAALSGIAAEGLEHGSRIPSR
TLASLEHQWGQGRELLTSKHILVIDEAGMLGTRQMERVVSHAQQQGAKVVMVGDPQQLQAIEAGAAFRAA
AERHGAVEIASIRRQQIDWQREATRELAIGRTGEALGRYEEAGHVHVAETREAARSQLVDAWDRDRQANP
DASRIILTHTNDEVRALNEAVREKVRASGDLGEDVALKVERGARQFADGDRVMFLKNERSLGVKNGSLGT
VESVSSLRMSVKLDDGKAVAFDLKDYAHLDHGYAATIHKAQGMTVDQVKLLATPGMDSHGAYVALSRHRS
QVDLHYGKDDFGDRKALTRTLSRERVKDMASDYARQAEKAAEQQPQRETRAGLKVSRSGHLADLLKGASV
AQQREPAAETRRKVALPEKVSDKQVFDNAVQRFARVAQDIVAMRDKGLQPLASQRTALDKAGAELNALRP
DSFGDLRKAVNRDLSLIPEAVKGRTDRAIQAMEQQSRLRIEAQRVAAANERRADGFVDQWQRQSEQYRAL
RKSGSAAASDKVRASLVDMAKGLERDPQLESVLAARRPQLGLDAMSTKTLSQDLQKSLGLSRGLGIGM

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(18-219)

AAA domain (AAA_30)

(352-539)


  Protein structure


Source ID Structure
AlphaFold DB A0A1B3NB15


Host bacterium

ID   1283 GenBank   NZ_CP016461
Plasmid name   pBSY18_4 Incompatibility group   _
Plasmid size   39932 bp Coordinate of oriT [Strand]   27002..27035 [-]
Host baterium   Blastomonas sp. RAC04

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -