Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   100822
Name   oriT_pBSY18_3 in_silico
Organism   Blastomonas sp. RAC04
Sequence Completeness      core
NCBI accession of oriT (coordinates [strand])   NZ_CP016459 (28191..28224 [+], 34 nt)
oriT length   34 nt
IRs (inverted repeats)      17..22, 26..31  (ACGTCG..CGACGT)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   predicted by the oriTfinder

  oriT sequence  


Download         Length: 34 nt

>oriT_pBSY18_3
GGGAGGGCGCGCTTATACGTCGTGCCGACGTGCG

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   894 GenBank   WP_069049348
Name   TraA_pBSY18_3 insolico UniProt ID   _
Length   979 a.a. PDB ID   
Note   putative relaxase

  Relaxase protein sequence


Download         Length: 979 a.a.        Molecular weight: 107303.96 Da        Isoelectric Point: 9.3200

>WP_069049348.1 Ti-type conjugative transfer relaxase TraA [Blastomonas sp. RAC04]
MAIYHFSAKAISRAAGSSAVAAAAYRAGERLHDDRLGRTHDFTNKAGVVHSEVMLPEGANEAWADRERLW
NDVEAAEVRKDAQLAREIEFALPREMTQAQAIELARDFVKAEFVDRGMIADLNIHWDIGADGEAKPHAHV
MLTMREIVVGEDGSATFGAKVRDWNRTELLTHWREAWATHANQRMAELDINARIDHRSLAAQGIDLEPQS
KIGAAASRMAGEGLSPERLAEHANIARSNGEKIIADPNIALTAITHQQATFTTRDLAMFAHRHSADKEQF
DAVMSAVKNAPELIALGKDGKGSDRFTSREMLETEQRLERTTIRLEARRSHAVPDRYREVALANAKLRGL
DLSLEQRGALEHVTSAKGVSNVIGYAGTGKSAMLGVAREAWERAGYTVQGAALSGIAAEGLEHGSRIPSR
TLASLEHQWKQGRELLTSKHILVIDEAGMLGTRQMERVVSHAQQHGAKVVMVGDPQQLQAIEAGAAFRAA
AERHGAVEIASIRRQQIDWQREATCELATGRTGEALGRYEQAGHVHVAETREAARAALVDAWERDRQAKP
DVSRIILTHTNDEVRALNEAVREKVRASGDLGDDVSLKVERGARQFADGDRIMFLKNERSLGVKNGSLGT
VESVSALRMSVKLDDGKAVAFDLKDYAHLDHGYAATIHKAQGMTVDQVKLLATPGMDSHGAYVALSRHRT
QVDLHYGKDDFADRKALTRTLSRERGKDMASDYARQPEKTAEASRPQLEARAGLRVSRSGYLADLLKGAT
AAPQREPVAKVRAKVALPEQATGRQAFDKAVQRFARVAQDIVAMRDKGLEPLVSQRSALNKAGAELNALR
PDSFGDLRRAVNCDLSLIGEAVKGRTDRAIQGMEQQARLRIEAQRVAAANEWRADNFVDQWQRQSQQYRA
LRKGGSAAASDKVRAELVGMAKGLERDPQLESVLANRRPQLGLDAMSTKTLSQDLQKSLGLSRGSGMGM

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(18-219)

AAA domain (AAA_30)

(352-539)


  Protein structure



No available structure.




Host bacterium

ID   1282 GenBank   NZ_CP016459
Plasmid name   pBSY18_3 Incompatibility group   _
Plasmid size   42134 bp Coordinate of oriT [Strand]   28191..28224 [+]
Host baterium   Blastomonas sp. RAC04

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -