Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   100761
Name   oriT_pATCC_43650 in_silico
Organism   Planococcus kocurii strain ATCC 43650
Sequence Completeness      core
NCBI accession of oriT (coordinates [strand])   NZ_CP013660 (8616..8653 [-], 38 nt)
oriT length   38 nt
IRs (inverted repeats)      1..8, 9..16  (CTTTACGA..TAGTAAAG)
Location of nic site      25..26
Conserved sequence flanking the
  nic site    		  GTG|CTA
Note   predicted by the oriTfinder

  oriT sequence  


Download         Length: 38 nt

>oriT_pATCC_43650
CTTTATGGAATAAAGTATAGTGTGCTATACTTTACATG

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   833 GenBank   WP_082707471
Name   PutativerelaxaseofpATCC_43650 insolico UniProt ID   _
Length   347 a.a. PDB ID   
Note   putative relaxase

  Relaxase protein sequence


Download         Length: 347 a.a.        Molecular weight: 41344.86 Da        Isoelectric Point: 8.3774

>WP_082707471.1 MobV family relaxase [Planococcus kocurii]
MQKMKSPDLKGMQFHNQRERESRTNPDIDPDREHLNYDLLHQEKIDYNKHVKEIIESQKVSERKTRKDAV
LVNELLVTSDRKFFDGLDLAEQKRFFEESYKLFSERYGKQNIAYATVHNDEKTPHMHLGVVPMRDGKLQG
KNIFNRQELQWMQEEFPKHMQSVGFDVERGIASDRKHIEMSRFKALTLNEEIKTLEKETEVLRNALTASK
KVDELQVSKPSLFDRNHVKLPVEDFEALKARAKATEAIERTIEAHEKRFDEMIDNVIDSDRKLDQEKVKT
AQLQKENKELKKENQELQKENKTLKSQLNVLLEFAKSQLEKFKEWQKERQQEKEKNIARKRDQELER

  Protein domains


Predicted by InterproScan.

Plasmid recombination enzyme (Mob_Pre)

(1-185)


  Protein structure



No available structure.




Host bacterium

ID   1221 GenBank   NZ_CP013660
Plasmid name   pATCC_43650 Incompatibility group   _
Plasmid size   13524 bp Coordinate of oriT [Strand]   8616..8653 [-]
Host baterium   Planococcus kocurii strain ATCC 43650

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -