Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   100744
Name   oriT_p12-4374_3 in_silico
Organism   Salmonella enterica subsp. enterica serovar Heidelberg strain 12-4374
Sequence Completeness      core
NCBI accession of oriT (coordinates [strand])   NZ_CP012927 (39..99 [-], 61 nt)
oriT length   61 nt
IRs (inverted repeats)      3..12, 16..25  (GTGTCGGGGC..GCCCTGACCC)
Location of nic site      57..58
Conserved sequence flanking the
  nic site    		  CTGG|CTTA
Note   predicted by the oriTfinder

  oriT sequence  


Download         Length: 61 nt

>oriT_p12-4374_3
GGGTGTCGGGGCGCAGCCCTGACCCAGTTCACAGAGCGATAGCGATGTGTATACTGGCTTA

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   816 GenBank   WP_000635821
Name   Nuclease_p12-4374_3 insolico UniProt ID   _
Length   524 a.a. PDB ID   
Note   putative relaxase

  Relaxase protein sequence


Download         Length: 524 a.a.        Molecular weight: 59269.83 Da        Isoelectric Point: 9.9740

>WP_000635821.1 MULTISPECIES: nuclease [Bacteria]
MIVKFHARGKGGGSGPVDYLLGRERNREGATVLRGNPEEVRELIDSTPFSKKYTSGVLSFAEKELPPGER
ERVMTSFERVLMPGLEKDQYSILWVEHQDKGRLELNFVIPNMELQSGKRLQPYYDRADRPRINAWQTLVN
HHYGLRDPNAPENRRTLVTPNNLPKAKQEAAEAITRGLEALYHAGAIKTRQDVTEALTAAGFEVVRTTKS
SISIADPEGGRNLRLKGALYEQSFTNGNRLREETERASRFYREHAEQRVQEARRVCRQGIELKQAENQRR
YQRTYNIREKATGYAEHHREHAVQHHRGRTVPAAEKTALAGDQRADTVSGADRAQRHGRHFPGVLGADGV
AGKQDCEKYPDYQRAGKHAGETRGKNLGGDVRQWREREISGVAGRGERGKHLDGGRQERREAGQGVNEYD
GTGRAFAERLRAFATGLYAAAERVGERLRGIAEDARGYATEQRDTERARRDIESAGAEISRASGSLESVI
YREQQLRDEQERARYRHEVQERAARVRSGPSMEM

  Protein domains


Predicted by InterproScan.

Relaxase/Mobilisation nuclease domain (Relaxase)

(57-240)


  Protein structure



No available structure.




Host bacterium

ID   1204 GenBank   NZ_CP012927
Plasmid name   p12-4374_3 Incompatibility group   _
Plasmid size   3372 bp Coordinate of oriT [Strand]   39..99 [-]
Host baterium   Salmonella enterica subsp. enterica serovar Heidelberg strain 12-4374

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -