Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   100734
Name   oriT_pKLDS6.0933-2 in_silico
Organism   Enterococcus durans strain KLDS 6.0933
Sequence Completeness      incomplete
NCBI accession of oriT (coordinates [strand])   NZ_CP012368 (8614..8659 [-], 46 nt)
oriT length   46 nt
IRs (inverted repeats)      IR1: 2..9, 11..18  (CATAGAAT..ATTCTTTG)
  IR2: 24..30, 31..37  (TTCAATC..GATTCAA)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   predicted by the oriTfinder

  oriT sequence  


Download         Length: 46 nt

>oriT_pKLDS6.0933-2
TCATAGAATAATTCTTTGTTTTCTTCAATCGATTCAATAGAAATAT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   806 GenBank   WP_053109534
Name   Mob_pKLDS6.0933-2 insolico UniProt ID   _
Length   399 a.a. PDB ID   
Note   putative relaxase

  Relaxase protein sequence


Download         Length: 399 a.a.        Molecular weight: 46099.34 Da        Isoelectric Point: 6.9145

>WP_053109534.1 MobV family relaxase [Enterococcus durans]
MAHLKKNTRGAVPGLAVHFERKTDHHTNKEIDVSKAYLNQDLMADGSDMLSRFNARLNDVYCMKRDDVKA
LAIWIVTLPEELAEAPYEQQSAFFEATTAFLNDRYGQENAVAAVVHYDETTPHLHYAFVPVVFDDKKSRY
KVSAKEVLTRHDLQTFHEDLNQHLKKVLPFYEHGILNNKTLPFENVAEIKKYNDQFNALKNELADVEENI
RAKQAVLKITDRALTEVDLAEKQIDDFKQALSKNLFGKTVLKPDDLDRFKNVLATMKKATLQSQHETEEL
KQTLGQVKAQLADVQADYQNLKETHQVLQKRQRDQQKLDYAMRDMLKNDYAVDKLSHTDVEARYVLYKLD
HEELTQNKKEAQSWLKTLTTARANPDTKIAPTRLDRGIEQVKALILFFI

  Protein domains


Predicted by InterproScan.

Plasmid recombination enzyme (Mob_Pre)

(1-166)


  Protein structure



No available structure.




Host bacterium

ID   1194 GenBank   NZ_CP012368
Plasmid name   pKLDS6.0933-2 Incompatibility group   _
Plasmid size   41490 bp Coordinate of oriT [Strand]   8614..8659 [-]
Host baterium   Enterococcus durans strain KLDS 6.0933

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -