Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 100730 |
| Name | oriT_pOLF-00D989_87-1-intermediate  |
| Organism | Salmonella enterica subsp. enterica serovar Enteritidis strain OLF-00D989 87-1 |
| Sequence Completeness | core |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP011944 (39..99 [-], 61 nt) |
| oriT length | 61 nt |
| IRs (inverted repeats) | 3..12, 16..25 (GTGTCGGGGC..GCCCTGACCC) |
| Location of nic site | 57..58 |
| Conserved sequence flanking the nic site |
CTGG|CTTA |
| Note | predicted by the oriTfinder |
oriT sequence
Download Length: 61 nt
>oriT_pOLF-00D989_87-1-intermediate
GGGTGTCGGGGCGCAGCCCTGACCCAGTTCACAGAGCGATAGCGATGTGTATACTGGCTTA
GGGTGTCGGGGCGCAGCCCTGACCCAGTTCACAGAGCGATAGCGATGTGTATACTGGCTTA
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 802 | GenBank | WP_000635821 |
| Name | Nuclease_pOLF-00D989_87-1-intermediate |
UniProt ID | _ |
| Length | 524 a.a. | PDB ID | |
| Note | putative relaxase | ||
Relaxase protein sequence
Download Length: 524 a.a. Molecular weight: 59269.83 Da Isoelectric Point: 9.9740
>WP_000635821.1 MULTISPECIES: nuclease [Bacteria]
MIVKFHARGKGGGSGPVDYLLGRERNREGATVLRGNPEEVRELIDSTPFSKKYTSGVLSFAEKELPPGER
ERVMTSFERVLMPGLEKDQYSILWVEHQDKGRLELNFVIPNMELQSGKRLQPYYDRADRPRINAWQTLVN
HHYGLRDPNAPENRRTLVTPNNLPKAKQEAAEAITRGLEALYHAGAIKTRQDVTEALTAAGFEVVRTTKS
SISIADPEGGRNLRLKGALYEQSFTNGNRLREETERASRFYREHAEQRVQEARRVCRQGIELKQAENQRR
YQRTYNIREKATGYAEHHREHAVQHHRGRTVPAAEKTALAGDQRADTVSGADRAQRHGRHFPGVLGADGV
AGKQDCEKYPDYQRAGKHAGETRGKNLGGDVRQWREREISGVAGRGERGKHLDGGRQERREAGQGVNEYD
GTGRAFAERLRAFATGLYAAAERVGERLRGIAEDARGYATEQRDTERARRDIESAGAEISRASGSLESVI
YREQQLRDEQERARYRHEVQERAARVRSGPSMEM
MIVKFHARGKGGGSGPVDYLLGRERNREGATVLRGNPEEVRELIDSTPFSKKYTSGVLSFAEKELPPGER
ERVMTSFERVLMPGLEKDQYSILWVEHQDKGRLELNFVIPNMELQSGKRLQPYYDRADRPRINAWQTLVN
HHYGLRDPNAPENRRTLVTPNNLPKAKQEAAEAITRGLEALYHAGAIKTRQDVTEALTAAGFEVVRTTKS
SISIADPEGGRNLRLKGALYEQSFTNGNRLREETERASRFYREHAEQRVQEARRVCRQGIELKQAENQRR
YQRTYNIREKATGYAEHHREHAVQHHRGRTVPAAEKTALAGDQRADTVSGADRAQRHGRHFPGVLGADGV
AGKQDCEKYPDYQRAGKHAGETRGKNLGGDVRQWREREISGVAGRGERGKHLDGGRQERREAGQGVNEYD
GTGRAFAERLRAFATGLYAAAERVGERLRGIAEDARGYATEQRDTERARRDIESAGAEISRASGSLESVI
YREQQLRDEQERARYRHEVQERAARVRSGPSMEM
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 1190 | GenBank | NZ_CP011944 |
| Plasmid name | pOLF-00D989_87-1-intermediate | Incompatibility group | _ |
| Plasmid size | 3372 bp | Coordinate of oriT [Strand] | 39..99 [-] |
| Host baterium | Salmonella enterica subsp. enterica serovar Enteritidis strain OLF-00D989 87-1 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |