Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 100707 |
| Name | oriT_pVR50D  |
| Organism | Escherichia coli VR50 |
| Sequence Completeness | intact |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP011138 (866..949 [-], 84 nt) |
| oriT length | 84 nt |
| IRs (inverted repeats) | 3..12, 16..25 (GTGTCGGGGC..GCCCTGACCC) |
| Location of nic site | 56..57 |
| Conserved sequence flanking the nic site |
CTGG|CTTA |
| Note | predicted by the oriTfinder |
oriT sequence
Download Length: 84 nt
>oriT_pVR50D
GGGGTGTCGGGGCGAAGCCCTGACCCAGTCACGTAGCGATAGCGGAGTGTATACTGGCTTAACCATTCGGCATCAGTGCGGATT
GGGGTGTCGGGGCGAAGCCCTGACCCAGTCACGTAGCGATAGCGGAGTGTATACTGGCTTAACCATTCGGCATCAGTGCGGATT
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 779 | GenBank | WP_046072959 |
| Name | MobC_pVR50D |
UniProt ID | _ |
| Length | 107 a.a. | PDB ID | |
| Note | putative relaxase | ||
Relaxase protein sequence
Download Length: 107 a.a. Molecular weight: 11802.66 Da Isoelectric Point: 9.6384
>WP_046072959.1 MULTISPECIES: MobC family plasmid mobilization relaxosome protein [Gammaproteobacteria]
MLTIRVTDDEHARLLERCEGKQLAVWMRRVCLGEPVARSGKLPTLAPPLLCQLAAIGNNLNQTARKVNSG
QWSSGDRVQVVAALMAIGDELRRLRLAVREQGARDDS
MLTIRVTDDEHARLLERCEGKQLAVWMRRVCLGEPVARSGKLPTLAPPLLCQLAAIGNNLNQTARKVNSG
QWSSGDRVQVVAALMAIGDELRRLRLAVREQGARDDS
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 1167 | GenBank | NZ_CP011138 |
| Plasmid name | pVR50D | Incompatibility group | ColRNAI |
| Plasmid size | 5631 bp | Coordinate of oriT [Strand] | 866..949 [-] |
| Host baterium | Escherichia coli VR50 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |