Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   100704
Name   oriT_CSK29544_2p in_silico
Organism   Cronobacter sakazakii strain ATCC 29544
Sequence Completeness      intact
NCBI accession of oriT (coordinates [strand])   NZ_CP011049 (2481..2654 [-], 174 nt)
oriT length   174 nt
IRs (inverted repeats)      2..11, 15..24  (GTTTCGGGGC..GCCCTGAACC)
Location of nic site      55..56
Conserved sequence flanking the
  nic site    		  CTGG|CTTA
Note   predicted by the oriTfinder

  oriT sequence  


Download         Length: 174 nt

>oriT_CSK29544_2p
GGTTTCGGGGCGCAGCCCTGAACCAGTCACGTAGCGCTAGCGGAGTGTATACTGGCTTACTATGTTGGCACGGATGCGAATATCAGTGAAGTGCTTCATGTGGCAGGAGAAAAATGCAGCAGCGGAGCGTCAGCAGAATATGCGATACAGGATATATTCCGCTTCCTCGCTCAC

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   776 GenBank   WP_007899683
Name   Nuclease_CSK29544_2p insolico UniProt ID   _
Length   501 a.a. PDB ID   
Note   putative relaxase

  Relaxase protein sequence


Download         Length: 501 a.a.        Molecular weight: 55455.81 Da        Isoelectric Point: 8.1221

>WP_007899683.1 MULTISPECIES: nuclease [Gammaproteobacteria]
MIVKFHPRGRGGGAGPVDYLLGKDRQREGASVLQGKPEEVRELIDASPYVKKYTSGVLSFAEADLPPGQR
EKLMASFERVLMPGLDKDQYSILWVEHEDKGRLELNFLIPNTELLTGRRLQPYYDRADRPRIDAWQTIVN
GRLGLHDPNAPENRRALVTPAGLPKTKQEAAEAITRGLLSLASSGELKSRQDVTEALEGAGFEVVRTTKS
SISIADPDGGRNIRLKGAIYEQSFNAGEGLRAAIESAAEEYRRDAESRIQRARAVCQSGTERKREENQRR
HQRPRAEYERGDGEKPAERVADGREDMAHHPDGVSAADRHEREHSVVAGTADNRQLHTSSSAGRYPGEND
RPDVGSTLSGEQRRPEVPYPAAGDASRSHPLRRDDLDPPETGVAENDRAGKAVAERIRAATAGLLAKAGR
MGERLRGMAEHVWTYATGERGAERARVGLEHAGAEFKRAAAPLVRELNAIEEKAALEYQRQNELELTLRQ
KQKSFDGPKMR

  Protein domains


Predicted by InterproScan.

Relaxase/Mobilisation nuclease domain (Relaxase)

(57-238)


  Protein structure



No available structure.




Host bacterium

ID   1164 GenBank   NZ_CP011049
Plasmid name   CSK29544_2p Incompatibility group   ColRNAI
Plasmid size   4938 bp Coordinate of oriT [Strand]   2481..2654 [-]
Host baterium   Cronobacter sakazakii strain ATCC 29544

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -