Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   100700
Name   oriT_pBR3 in_silico
Organism   Bifidobacterium breve strain BR3
Sequence Completeness      core
NCBI accession of oriT (coordinates [strand])   NZ_CP010414 (1384..1418 [+], 35 nt)
oriT length   35 nt
IRs (inverted repeats)      4..11, 15..22  (ATGTTACC..GGTAACAT)
Location of nic site      31..32
Conserved sequence flanking the
  nic site    		  TAAGTGCG|CCCT
Note   predicted by the oriTfinder

  oriT sequence  


Download         Length: 35 nt

>oriT_pBR3
TGAATGTTACCACCGGTAACATGTAAGTGCGCCCT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   772 GenBank   WP_080790630
Name   MobA_pBR3 insolico UniProt ID   _
Length   400 a.a. PDB ID   
Note   putative relaxase

  Relaxase protein sequence


Download         Length: 400 a.a.        Molecular weight: 45113.94 Da        Isoelectric Point: 10.1091

>WP_080790630.1 MobA/MobL family protein [Bifidobacterium breve]
MAIYSLHVSNVSRAAGSSAVASCSYITSRRMRDERTGEAFNGFGRRERVEHVCTMLPEGAPGEYLDPERL
FNAVEMAEKRSDARPAKKIMVALPREFDARERFRALEDFISWNITANGYACTYAIHTDKDGRNPHAHILV
ANRRIDPKTGRWAAKSRSEFALDANGRRIPVIDPDTGRQKIGARNRKVWKRVNVSNNPLDSKEFLERLRR
EWADSCNALLPGYAVIDHRSFKARGIERIPTIHEGYASREMEKRGGRGDLCEENRRIQALNRLLDALRAM
IGRLSDQAQGILTAVKRRQRPSGAPQAPSSPEPAEKPQERPQARETPPQAPQEPPKPIRTKKALTDRFKT
RLDERLAENERKQAEKQAEPDMEETWDLSDPADPLNIGMGWGTGGHGLGL

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(18-254)


  Protein structure



No available structure.




Host bacterium

ID   1160 GenBank   NZ_CP010414
Plasmid name   pBR3 Incompatibility group   _
Plasmid size   4891 bp Coordinate of oriT [Strand]   1384..1418 [+]
Host baterium   Bifidobacterium breve strain BR3

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -