Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   100699
Name   oriT_p6200-47.274kb in_silico
Organism   Acinetobacter baumannii strain 6200
Sequence Completeness      incomplete
NCBI accession of oriT (coordinates [strand])   NZ_CP010399 (37700..37737 [+], 38 nt)
oriT length   38 nt
IRs (inverted repeats)      8..17, 21..30  (CATAAGGGAA..TTCCCTTATG)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   predicted by the oriTfinder

  oriT sequence  


Download         Length: 38 nt

>oriT_p6200-47.274kb
AGGGATTCATAAGGGAATTATTCCCTTATGTGGGGCTT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   771 GenBank   WP_017480453
Name   TraA_p6200-47.274kb insolico UniProt ID   _
Length   970 a.a. PDB ID   
Note   putative relaxase

  Relaxase protein sequence


Download         Length: 970 a.a.        Molecular weight: 110764.85 Da        Isoelectric Point: 8.1822

>WP_017480453.1 MULTISPECIES: AAA family ATPase [Gammaproteobacteria]
MAIYHLSVKTGRQYGSTGTRGANHYAYINRDGKYKRDDLENIKSGNLPSWATDAKHFWKSADKNERINGR
VYTELEISLPRELNKEQREELVEKFVEKTLGENFTYSYAIHSPLASDGQQNPHVHLMFSERKLDGIERDE
VKHFKRYNPVNPEKGGAGKDRYFSSKMFVVDTRLEWANHVNDFCENLGIDARIDHRSFKEQGIELSSQNF
RADYVSSHKYHINENIKQVRHQNGEIIIERPSEAIKALTSNQSVFSVRELERFLMAHTDGEEQYLKAYES
VITCPDMATLYGKDKVVFSSKELVGIEESISTFIYNANEESRIQKPFNLVEKLPLNAVRVAETRTFNSEQ
EKAFYTLTSTDRITLLNGSAGTGKSYVLSAVSEAYKESDYQVYGIALQAITAKAIANDCDIPSSTIASFL
SKYDSGNLEINNKTVLILDEAGMVGSRDMQRLLMLVEKHDAQIKLVGDSYQLSAVSAGHVFANIQENLDK
KNIASLEDIQRQKHAKESDKMIQASKYLSKHEVGKAIDIYKSINMVNEYESHDLALAKTVKSWSEDSSES
KLMLAHSNSDVNELNRMARALLIKQGKLNPESVSVKNYQGDLDISIGEKIVFKQNNSQMKVSNGELAKVI
GFEKDKFNNPKAMMVQMESDSRIVRVDLKEYDQFKHGYANTIHSSQGMTVDSAYIVASENMNANLTYVAL
TRHKQNIQINYSALTFATNEKETVKTPDGKVSYDHNYKPVEREVTAFENFKKVLGRSETKEFSTDFTLVE
SKDNLMKSYLNDHRLHLENKRELFGINSKLYSLTSENKTFTKEEIVSEVRASLKSKALLGDEIVKFNGNM
NIAKGELVKLTNDLEIKTGLFKKVTFEKGTELKVIDAYKVKDKPVMKARIKNEEYEIPFNKLNLEYSDKY
FNEFKDQSKARFDSRHKTEVYTEFREQLLKQKANAPKDNLNAPNQRIKNPNTPNRNTPKY

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(43-208)

AAA domain (AAA_30)

(346-538)

Viral (Superfamily 1) RNA helicase (Viral_helicase1)

(661-709)


  Protein structure



No available structure.




T4SS

T4SS were predicted by using oriTfinder2.

Region 1: 12883..26178

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
RU84_RS19100 (RU84_19100) 8761..9408 - 648 WP_004993315 recombinase family protein -
RU84_RS19105 (RU84_19105) 9560..9784 + 225 WP_015056389 hypothetical protein -
RU84_RS19860 9968..11680 + 1713 WP_015060705 zeta toxin family protein -
RU84_RS19120 (RU84_19120) 11677..12159 - 483 WP_015060706 thermonuclease family protein -
RU84_RS19125 (RU84_19125) 12359..12820 - 462 WP_015060707 hypothetical protein -
RU84_RS19130 (RU84_19130) 12883..13524 - 642 WP_004999358 type IV secretion system protein virB5
RU84_RS19135 (RU84_19135) 13521..16232 - 2712 WP_015060708 VirB4 virb4
RU84_RS19140 (RU84_19140) 16244..16537 - 294 WP_017480461 TrbC/VirB2 family protein virB2
RU84_RS19145 (RU84_19145) 16548..17258 - 711 WP_017480462 lytic transglycosylase domain-containing protein -
RU84_RS19150 (RU84_19150) 17303..17503 - 201 WP_004999346 hypothetical protein -
RU84_RS19155 (RU84_19155) 17522..19039 - 1518 WP_015060710 type IV secretion system DNA-binding domain-containing protein virb4
RU84_RS19160 (RU84_19160) 19036..20283 - 1248 WP_017480463 lytic transglycosylase domain-containing protein -
RU84_RS19165 (RU84_19165) 20365..20817 - 453 WP_004999340 hypothetical protein -
RU84_RS19170 (RU84_19170) 20821..21150 - 330 WP_004999338 hypothetical protein -
RU84_RS19175 (RU84_19175) 21119..22156 - 1038 WP_015060713 P-type DNA transfer ATPase VirB11 virB11
RU84_RS19180 (RU84_19180) 22172..23551 - 1380 WP_005000433 TrbI/VirB10 family protein virB10
RU84_RS19185 (RU84_19185) 23553..24290 - 738 WP_005000435 TrbG/VirB9 family P-type conjugative transfer protein virB9
RU84_RS19190 (RU84_19190) 24305..25093 - 789 WP_005000436 VirB8/TrbF family protein virB8
RU84_RS19195 (RU84_19195) 25093..26178 - 1086 WP_005000437 type IV secretion system protein virB6
RU84_RS19200 (RU84_19200) 26186..26605 - 420 WP_005000439 hypothetical protein -
RU84_RS19205 (RU84_19205) 26592..26963 - 372 WP_005000442 hypothetical protein -
RU84_RS19215 (RU84_19215) 28585..28824 + 240 WP_005000443 hypothetical protein -
RU84_RS19220 (RU84_19220) 28841..29530 + 690 WP_005000446 ParA family partition ATPase -
RU84_RS19225 (RU84_19225) 29527..29931 + 405 WP_005000449 hypothetical protein -

Host bacterium

ID   1159 GenBank   NZ_CP010399
Plasmid name   p6200-47.274kb Incompatibility group   _
Plasmid size   47274 bp Coordinate of oriT [Strand]   37700..37737 [+]
Host baterium   Acinetobacter baumannii strain 6200

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -