Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   100698
Name   oriT_p34998-4.921kb in_silico
Organism   Enterobacter hormaechei subsp. steigerwaltii strain 34998
Sequence Completeness      intact
NCBI accession of oriT (coordinates [strand])   NZ_CP010381 (3321..3494 [-], 174 nt)
oriT length   174 nt
IRs (inverted repeats)      2..11, 15..24  (GTTTCGGGGC..GCCCTGAACC)
Location of nic site      55..56
Conserved sequence flanking the
  nic site    		  CTAG|CGGA
Note   predicted by the oriTfinder

  oriT sequence  


Download         Length: 174 nt

>oriT_p34998-4.921kb
GGTTTCGGGGCGCAGCCCTGAACCAGTCACGTAGCGCTAGCGGAGTGTATACTGGCTTACTATATTGGCACGGATGCGAATATCAGTGAAGTGCTTCATGTGGCAGGAGAAAAATGCAGCAGCGGAGCGTCAGCAGAATATGTGATACAGGATATATTCCGCTTCCTCGCTCAC

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   770 GenBank   WP_032656227
Name   Putativerelaxaseofp34998-4.921kb insolico UniProt ID   A0A1D3B9Z2
Length   501 a.a. PDB ID   
Note   putative relaxase

  Relaxase protein sequence


Download         Length: 501 a.a.        Molecular weight: 55359.70 Da        Isoelectric Point: 8.1221

>WP_032656227.1 MULTISPECIES: relaxase/mobilization nuclease domain-containing protein [Enterobacterales]
MIVKFHPRGRGGGAGPVDYLLGKDRQREGASVLQGKPEEVRELIDASPYVKKYTSGVLSFAEADLPPGQR
EKLMASFERVLMPGLDKDQYSILWVEHEDKGRLELNFLIPNTELLTGRRLQPYYDRADRPRIDAWQTIVN
GRLGLHDPNAPENRRALVTPAGLPKTKQEAAEAITRGLLSLASSGELKSRQDVTEALEGAGFEVVRTTKS
SISIADPDGGRNIRLKGAIYEQSFNAGEGLRAAIESAAEEYRRDAESRIQRARAVCQSGTERKREENQRR
HQRPRAEYERGDGEKPAERVADGREDMAHHPDGVSAADRHEREHSVVAGAADNRQLHASSSAGRYPGEND
RPDVGSALSGEQRRPEVSYPAAGDASRSHPLRRDDMDPPETGVAENDRAGKAVAERIRAATAGLLAKAGR
MGERLRGMAEHVWSYATGERGAERARVGLEHAGAEFKRAAAPLVRELNAIEEKAALEYQRQNELELTLRQ
KQKSFDGPKMR

  Protein domains


Predicted by InterproScan.

Relaxase/Mobilisation nuclease domain (Relaxase)

(57-238)


  Protein structure



No available structure.




Host bacterium

ID   1158 GenBank   NZ_CP010381
Plasmid name   p34998-4.921kb Incompatibility group   ColRNAI
Plasmid size   4921 bp Coordinate of oriT [Strand]   3321..3494 [-]
Host baterium   Enterobacter hormaechei subsp. steigerwaltii strain 34998

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -