Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   100694
Name   oriT_p6411-9.012kb in_silico
Organism   Acinetobacter nosocomialis strain 6411
Sequence Completeness      incomplete
NCBI accession of oriT (coordinates [strand])   NZ_CP010370 (7621..7658 [+], 38 nt)
oriT length   38 nt
IRs (inverted repeats)      8..17, 21..30  (CATAAGGGAA..TTCCCTTATG)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   predicted by the oriTfinder

  oriT sequence  


Download         Length: 38 nt

>oriT_p6411-9.012kb
AGGGATTCATAAGGGAATTATTCCCTTATGTGGGGCTT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   766 GenBank   WP_044709975
Name   TraA_p6411-9.012kb insolico UniProt ID   A0A0C5INC3
Length   970 a.a. PDB ID   
Note   putative relaxase

  Relaxase protein sequence


Download         Length: 970 a.a.        Molecular weight: 110750.78 Da        Isoelectric Point: 7.9669

>WP_044709975.1 AAA family ATPase [Acinetobacter nosocomialis]
MAIYHLSVKTGRQYGSTGTRGANHYAYINRDGKYKRDDLENIKSGNLPSWATDAKHFWKSADKNERINGR
VYTELEISLPRELNKEQREELVEKFVEKTLGENFTYSYAIHSPLASDGQQNPHVHLMFSERKLDGIERDE
VKHFKRYNPVNPEKGGAGKDRYFSSKMFVVDTRLEWANHVNDFCENLGIDARIDHRSFKEQGIELSSQNF
RADYVSSHKYHINENIKQVRHQNGEIIIERPSEAINALTSNQSVFSVRELERFLMAHTDGEEQYLKAYES
VITCPDMATLYGKDKVVFSSKELVGIEESISTFIYNANEESRIQKPFNLVEKLPLNAVRVAETRTFNSEQ
EKAFYTLTSTDRITLLNGSAGTGKSYVLSAVSEAYKESDYQVYGIALQAITAKAIANDCDIPSSTIASFL
SKYDSGNLEINNKTVLILDEAGMVGSRDMQRLLMLVEKHDAQIKLVGDSYQLSAVSAGHVFANIQENLDK
KNIASLEDIQRQKHAKESDKMIQASKYLSKHEVGKAIDIYKSINMVNEYESHDLALAKTVKSWSEDSSES
KLMLAHSNSDVNELNRMARALLIKQGKLNPESVSVKNYQGDLDISIGEKIVFKQNNSQMKVSNGELAKVI
GFEKDKFNNPKAMMVQMESDSRIVRVDLKEYDQFKHGYANTIHSSQGMTVDSAYIVASENMNANLTYVAL
TRHKQNIQINYSALTFATNEKETVKTPDGKVSYDHNYKPVEREVTAFENFKKVLGRSETKEFSTDFTLVE
SKDNLMKSYLNDHRLHLENKRELFGINSKLYSLTSENKTFTKEEIVSEVRASLKSKALLGDEIVKFNGNM
NIAKGELVKLTNDLEIKTGLFKKVTFEKGTELKVIDAYKVKDKPVMKARIKNEEYEIPFNKLNLEYSDKY
FNEFKDQSKARFDSRHKTEVYTEFREQLLKQKANAPKDNLNAPNQRIKNPNTPNRNTPKY

  Protein domains


Predicted by InterproScan.

AAA domain (AAA_30)

(346-538)

MobA/MobL family (MobA_MobL)

(43-208)

Viral (Superfamily 1) RNA helicase (Viral_helicase1)

(661-709)


  Protein structure



No available structure.




T4SS

T4SS were predicted by using oriTfinder2.

Region 1: 30078..43373

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
RR32_RS18735 (RR32_19135) 25956..26603 - 648 WP_004993315 recombinase family protein -
RR32_RS18740 (RR32_19140) 26755..26979 + 225 WP_015056389 hypothetical protein -
RR32_RS19830 27163..28875 + 1713 WP_015060705 zeta toxin family protein -
RR32_RS18750 (RR32_19155) 28872..29258 - 387 WP_227513993 thermonuclease family protein -
RR32_RS18755 (RR32_19160) 29554..30015 - 462 WP_015060707 hypothetical protein -
RR32_RS18760 (RR32_19165) 30078..30719 - 642 WP_004999358 type IV secretion system protein virB5
RR32_RS18765 (RR32_19170) 30716..33427 - 2712 WP_015060708 VirB4 virb4
RR32_RS18770 (RR32_19175) 33439..33732 - 294 WP_017480461 TrbC/VirB2 family protein virB2
RR32_RS18775 (RR32_19180) 33743..34453 - 711 WP_017480462 lytic transglycosylase domain-containing protein -
RR32_RS18780 (RR32_19185) 34498..34698 - 201 WP_004999346 hypothetical protein -
RR32_RS18785 (RR32_19190) 34717..36234 - 1518 WP_015060710 type IV secretion system DNA-binding domain-containing protein virb4
RR32_RS18790 (RR32_19195) 36231..37478 - 1248 WP_017480463 lytic transglycosylase domain-containing protein -
RR32_RS18795 (RR32_19200) 37560..38012 - 453 WP_004999340 hypothetical protein -
RR32_RS18800 (RR32_19205) 38016..38345 - 330 WP_004999338 hypothetical protein -
RR32_RS18805 (RR32_19210) 38314..39351 - 1038 WP_015060713 P-type DNA transfer ATPase VirB11 virB11
RR32_RS18810 (RR32_19215) 39367..40746 - 1380 WP_005000433 TrbI/VirB10 family protein virB10
RR32_RS18815 (RR32_19220) 40748..41485 - 738 WP_005000435 TrbG/VirB9 family P-type conjugative transfer protein virB9
RR32_RS18820 (RR32_19225) 41500..42288 - 789 WP_005000436 VirB8/TrbF family protein virB8
RR32_RS18825 (RR32_19230) 42288..43373 - 1086 WP_005000437 type IV secretion system protein virB6
RR32_RS18830 (RR32_19235) 43381..43800 - 420 WP_005000439 hypothetical protein -
RR32_RS18835 (RR32_19240) 43787..44158 - 372 WP_005000442 hypothetical protein -
RR32_RS18845 (RR32_19250) 45780..46019 + 240 WP_005000443 hypothetical protein -
RR32_RS18850 (RR32_19255) 46036..46725 + 690 WP_005000446 ParA family partition ATPase -
RR32_RS18855 (RR32_19260) 46722..47126 + 405 WP_005000449 hypothetical protein -

Host bacterium

ID   1154 GenBank   NZ_CP010370
Plasmid name   p6411-9.012kb Incompatibility group   _
Plasmid size   47274 bp Coordinate of oriT [Strand]   7621..7658 [+]
Host baterium   Acinetobacter nosocomialis strain 6411

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -