Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   100640
Name   oriT_p219298_1 in_silico
Organism   Bacillus pseudomycoides strain 219298
Sequence Completeness      core
NCBI accession of oriT (coordinates [strand])   NZ_CP007621 (4422..4460 [-], 39 nt)
oriT length   39 nt
IRs (inverted repeats)      1..8, 9..16  (CTTTACGA..TAGTAAAG)
Location of nic site      25..26
Conserved sequence flanking the
  nic site    		  GTG|CTA
Note   predicted by the oriTfinder

  oriT sequence  


Download         Length: 39 nt

>oriT_p219298_1
CTTTACGATAGTAAAGTATAGTGTGCTATACTTTACATG

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   712 GenBank   WP_051977349
Name   Putativerelaxaseofp219298_1 insolico UniProt ID   A0A076VZW7
Length   408 a.a. PDB ID   
Note   putative relaxase

  Relaxase protein sequence


Download         Length: 408 a.a.        Molecular weight: 47853.63 Da        Isoelectric Point: 9.6347

>WP_051977349.1 MobV family relaxase [Bacillus pseudomycoides]
MSYAICRMQKFKMRDVKGIQIHNQREKESHTNHDIESERTHLNYDLHNDGHIDYLKTVKDKIEQNVETNR
AIRKDAVVMCEFVVTSDREFFDVLDMVDPAQQKVFFKEAYSFLKDRYGEQNIVHAAVHLDEKTPHMHVGM
VPVTEENKLSAKQIFNRKELVSLQDDFHAHMVEKGFYLERGVSSDKKHVEMRKFKAMTAKEEINALEKEI
GQCLQKKEVVNKQMEQLESRLNQLQNAVKSTNKVDKIEVKHKGGILRSKTVEMSVEDFEGLKTKAKASEA
FKRENMTLHRKNEALQASNTDLHTTVKRLEKENEGLKPYKGKYERLAKLFDEMNKFYEKFIPKEVSKFHE
IIGFCKRKVNASINRFSSLRYSEKALNENEKKGYEAASKFLATQQKQQRKERGNEREL

  Protein domains


Predicted by InterproScan.

Plasmid recombination enzyme (Mob_Pre)

(1-196)


  Protein structure



No available structure.




Host bacterium

ID   1100 GenBank   NZ_CP007621
Plasmid name   p219298_1 Incompatibility group   _
Plasmid size   4602 bp Coordinate of oriT [Strand]   4422..4460 [-]
Host baterium   Bacillus pseudomycoides strain 219298

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -