Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   100628
Name   oriT_pRgalR602a in_silico
Organism   Rhizobium gallicum bv. gallicum R602sp strain R602 voucher MSDJ1109
Sequence Completeness      core
NCBI accession of oriT (coordinates [strand])   NZ_CP006878 (194422..194466 [+], 45 nt)
oriT length   45 nt
IRs (inverted repeats)      23..28, 33..38  (CGTCGC..GCGACG)
Location of nic site      12..13
Conserved sequence flanking the
  nic site    		  _
Note   predicted by the oriTfinder

  oriT sequence  


Download         Length: 45 nt

>oriT_pRgalR602a
GGATCCGAAGGGCGCAATTATACGTCGCTGACGCGACGCCCTTGC

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   700 GenBank   WP_040114085
Name   TraA_pRgalR602a insolico UniProt ID   A0A0B4X635
Length   1103 a.a. PDB ID   
Note   putative relaxase

  Relaxase protein sequence


Download         Length: 1103 a.a.        Molecular weight: 122144.97 Da        Isoelectric Point: 9.0364

>WP_040114085.1 Ti-type conjugative transfer relaxase TraA [Rhizobium gallicum]
MAVPHFSVSVVARGSGRSAVLSAAYRHCAKMEFEREARTIDYTRKQGLLHEEFVIPADAPEWLRSMIADR
SVSGASEAFWNRVEDFEKRSDAQLAKDVTIALPIELTAEQNIALVRDFVEQQITATGMVADWVYHDAPGN
PHVHLMTTLRPLTADGFGAKKVAVTGPDGNPIRNDAGKIVYELWAGSIDDFNVFRDGWFACQNRHLALAG
LDIRVDGRSFEKQGIDLEPTIHLGVGTKAIERKADGAAQPIELERLELQDAKRSENVRRIDRNPELVLDL
IMREKSVFDERDVAKILHRYVDDAVLFQSLMVRILLCPETFRIERERLDLASGIREPAKYTTRDMIRLEA
EMANRAVWLSQRSTHGVREAVLAATFARHERLSDEQKTAIEHVAGPERIAAVIGRAGAGKTTMMKAAREA
WEAAGYRVVGAALAGKAAEGLEKEAGIISRTLASWELRWNQGRDQLDGKTVFVLDEAGMVSSRQMALFVE
AVTKAGAKLVLVGDPEQLQPIEAGAAFRAIADRIGYAELETIYRQRQQWMRDASLDLARGKVGSAVDAYR
ANGRVIGSDLKADAVDNLIAAWDRDYDPAKTSLILAHLRRDVRMLNQMARIKLIERGVLDQGTMFRTADG
ERNFAVGDQIVFLKNEGSLGVKNGMLAKVVETGPGRITARIGEGEDARHVLVEQRFYNNLDHGYATTIHK
SQGATVDQVKVLASLSLDRHLTYVAMTRHREDLAVYYGRRSFAKNGGLIPILSRSNAKETTLDYENSAFY
RQALRFAEARGLHLVNVARTLVRDRLEWVVSQKQKLANLGARLAAVAGRLGLIRGAAQYLTQNNTKEPKP
MVSGITAFAKSVDQAIEDKVAVDPGLKKQWEEVSTRFHLVYAQPESAFKAVNVDAMLKDETVATSTLAKL
GSEPESFGALKGKTGILASRADKQEREKAQTNAPALARNLERYLRQRAEAERKFEVEERAVRLKVSIDIP
ALSPNAKQTLERVRDAIDQNDLPAGLEYALADKMVKAELEGFAKAVSDRFGERTFLSLAAQDPSGQTFNA
VTSGMTAGQKAEVQSAWNSMRTVQQLAAHERTTEALKQAETLRQTKSQGLSLK

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(17-243)

AAA domain (AAA_30)

(382-567)

Viral (Superfamily 1) RNA helicase (Viral_helicase1)

(692-735)

BID domain of Bartonella effector protein (Bep) (Bep_C_terminal)

(859-955)


  Protein structure


Source ID Structure
AlphaFold DB A0A0B4X635


Host bacterium

ID   1088 GenBank   NZ_CP006878
Plasmid name   pRgalR602a Incompatibility group   _
Plasmid size   203748 bp Coordinate of oriT [Strand]   194422..194466 [+]
Host baterium   Rhizobium gallicum bv. gallicum R602sp strain R602 voucher MSDJ1109

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -