Detailed information of oriT

oriT


The information of the oriT region


oriTDB ID   100600
Name   oriT_pCTXM5-1845 in_silico
Organism   Salmonella enterica subsp. enterica serovar Typhimurium
Sequence Completeness      intact
NCBI accession of oriT (coordinates [strand])   NC_025150 (1959..2133 [+], 175 nt)
oriT length   175 nt
IRs (inverted repeats)      2..11, 15..24  (GTTTCGGGGC..GCCCTGAACC)
Location of nic site      55..56
Conserved sequence flanking the
  nic site  
 
 CTGG|CTTA
Note   predicted by the oriTfinder

  oriT sequence  


Download         Length: 175 nt

>oriT_pCTXM5-1845
GGTTTCGGGGCGCAGCCCTGAACCAGTCACGTAGCGCTAGCGGAGTGTATACTGGCTTACTATGTTGGCATGGATGCGGAAATCAGTGAAGTGCTTCATGTGGAAGGAGAAAAAAGGTGGCACCGGCGCGTCAGCAGAATATGCGATACAGGATATATTCCGCTTCCTCGCTCAC

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase


ID   672 GenBank   YP_009069721
Name   MobA_pCTXM5-1845 insolico UniProt ID   I6ZWA6
Length   515 a.a. PDB ID   
Note   putative relaxase

  Relaxase protein sequence


Download         Length: 515 a.a.        Molecular weight: 57068.61 Da        Isoelectric Point: 7.9937

>YP_009069721.1 MobA (plasmid) [Salmonella enterica subsp. enterica serovar Typhimurium]
MPDLSGCGTPFLRKERTMIVKFHPRGRGGGAGPVDYLLGKDRQREGATVLQGKPEEVRELIDASPYVKKY
TSGVLSFAEADLPPGQREKLMASFERVLMPGLDKDQYSILWVEHADKGRLELNFLIPNTELLTGRRLQPY
YDRADRPRIDAWQTIVNGRLGLHDPNAPENRRALVTPSGLPKTTQEAAEAITRGLLSLASSGELKSRQDV
TDTLEGAGFEVVRTTKSSISIADPDGGRNIRLKGAIYEQSFYGLEGLRGEIESAAAEYRRDAESRIQRAR
AVCQSGTERKREENQRRHQRPRAEYERGDGEKPAERAADGREDMAHHPDGVSAADRHEREHSVVAGAADN
RQLHASSSAGRYPGENDRPDVGSALSGEQRRPEVSYPAAGDANRSHPLRRDDMDPPETGVAENDRAGKAV
AERIRAATAGLLAKAGRMGERLRGMAEHVWAYATGERDAERARVGLEHAGAEFKRAAAPLVRELNAIELR
QRENEYQKTLELERQPQKTYRGPTL

  Protein domains


Predicted by InterproScan.

(74-255)


  Protein structure


Source ID Structure
AlphaFold DB I6ZWA6


Host bacterium


ID   1060 GenBank   NC_025150
Plasmid name   pCTXM5-1845 Incompatibility group   Col440II
Plasmid size   8215 bp Coordinate of oriT [Strand]   1959..2133 [+]
Host baterium   Salmonella enterica subsp. enterica serovar Typhimurium

Cargo genes


Drug resistance gene   blaCTX-M-5
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -