Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 100540 |
| Name | oriT2_pBBKW-1  |
| Organism | Bifidobacterium catenulatum subsp. kashiwanohense JCM 15439 = DSM 21854 |
| Sequence Completeness | core |
| NCBI accession of oriT (coordinates [strand]) | NC_021875 (7606..7637 [+], 32 nt) |
| oriT length | 32 nt |
| IRs (inverted repeats) | 1..8, 12..19 (ATGCAACC..GGTTGCAT) |
| Location of nic site | 28..29 |
| Conserved sequence flanking the nic site |
TAAGTGCG|CCCT |
| Note | predicted by the oriTfinder |
oriT sequence
Download Length: 32 nt
>oriT2_pBBKW-1
ATGCAACCTCCGGTTGCATGTAAGTGCGCCCT
ATGCAACCTCCGGTTGCATGTAAGTGCGCCCT
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 611 | GenBank | YP_008327319 |
| Name | Mob_pBBKW-1 |
UniProt ID | S6C6B0 |
| Length | 565 a.a. | PDB ID | |
| Note | putative relaxase | ||
Relaxase protein sequence
Download Length: 565 a.a. Molecular weight: 64568.01 Da Isoelectric Point: 9.8500
>YP_008327319.1 putative mobilization protein (plasmid) [Bifidobacterium catenulatum subsp. kashiwanohense JCM 15439 = DSM 21854]
MAIYHLSVSNVSRASGSKATATLSYISGKRVHDERRGETYDYGRKERVLRVGTLLPEGAPAEFADPAVLF
NAVELHETGRTARPAKKIVVALPREFTPRQRVQALEEYIRENLNADGYAATYAIHEDREGNNPHAHILVA
NRQIDPATGGWARLKQRMEYVLDERGERVPLIDPETGRQKTDKRGRRQWKRTSVSLNPLDRKAKLKALRE
SWANTCNARLDETARIDHRSLEDQGSDLEPTIHEGYAARAIERAGGVSERCQTNREIRRSNSLLTAVRAE
LGRIFDRLGELFAAKIRQLRRRQARPEPAREPNWRYFEGDARRQLEADKADHTAAIRGKLMDARADVGNR
EEWWRSHGTEEHEAAKQIIDVARAASREARDANIFKRGRLLRNAEQVAGEQSEKLRGAVPWLEDTDIPAD
WDQANRFRMRTTKAIHDHDMQPRTRLVAELERRLEQAERAESEKPSPEQVKALALRMAEQRAQAENPTQD
TKRPAPSGDEPLDLSEPEDWGEASPFESRQAPRTKADLLNEIRQRTDRLTGQREAEQRQIDPWSAQPPQR
RGHGR
MAIYHLSVSNVSRASGSKATATLSYISGKRVHDERRGETYDYGRKERVLRVGTLLPEGAPAEFADPAVLF
NAVELHETGRTARPAKKIVVALPREFTPRQRVQALEEYIRENLNADGYAATYAIHEDREGNNPHAHILVA
NRQIDPATGGWARLKQRMEYVLDERGERVPLIDPETGRQKTDKRGRRQWKRTSVSLNPLDRKAKLKALRE
SWANTCNARLDETARIDHRSLEDQGSDLEPTIHEGYAARAIERAGGVSERCQTNREIRRSNSLLTAVRAE
LGRIFDRLGELFAAKIRQLRRRQARPEPAREPNWRYFEGDARRQLEADKADHTAAIRGKLMDARADVGNR
EEWWRSHGTEEHEAAKQIIDVARAASREARDANIFKRGRLLRNAEQVAGEQSEKLRGAVPWLEDTDIPAD
WDQANRFRMRTTKAIHDHDMQPRTRLVAELERRLEQAERAESEKPSPEQVKALALRMAEQRAQAENPTQD
TKRPAPSGDEPLDLSEPEDWGEASPFESRQAPRTKADLLNEIRQRTDRLTGQREAEQRQIDPWSAQPPQR
RGHGR
Protein domains
Predicted by InterproScan.
Protein structure
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | S6C6B0 |
Host bacterium
| ID | 1000 | GenBank | NC_021875 |
| Plasmid name | pBBKW-1 | Incompatibility group | _ |
| Plasmid size | 7716 bp | Coordinate of oriT [Strand] | 3922..3953 [+]; 7606..7637 [+] |
| Host baterium | Bifidobacterium catenulatum subsp. kashiwanohense JCM 15439 = DSM 21854 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |