Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   100539
Name   oriT1_pBBKW-1 in_silico
Organism   Bifidobacterium catenulatum subsp. kashiwanohense JCM 15439 = DSM 21854
Sequence Completeness      core
NCBI accession of oriT (coordinates [strand])   NC_021875 (7606..7637 [+], 32 nt)
oriT length   32 nt
IRs (inverted repeats)      1..8, 12..19  (ATGCAACC..GGTTGCAT)
Location of nic site      28..29
Conserved sequence flanking the
  nic site    		  TAAGTGCG|CCCT
Note   predicted by the oriTfinder

  oriT sequence  


Download         Length: 32 nt

>oriT1_pBBKW-1
ATGCAACCTCCGGTTGCATGTAAGTGCGCCCT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   610 GenBank   YP_008327316
Name   Mob_pBBKW-1 insolico UniProt ID   S6BIT5
Length   565 a.a. PDB ID   
Note   putative relaxase

  Relaxase protein sequence


Download         Length: 565 a.a.        Molecular weight: 64527.89 Da        Isoelectric Point: 9.6075

>YP_008327316.1 putative mobilization protein (plasmid) [Bifidobacterium catenulatum subsp. kashiwanohense JCM 15439 = DSM 21854]
MAIYHLSVSNVSRASGSKATATLSYISGKRVHDERRGETYDYGRKERVLRVGTLLPEGAPAEYADPAVLF
NAVELHETGRTARPAKKIVVALPREFTPRQRVQALEEYIRENLNADGYAATYAIHEDREGNNPHAHILVA
NRQIDPATGGWARLKQRMEYVLDERGERVPLIDPETGRQKTDKRGRRQWKRTSVSLNPLDRKAKLKALRE
SWANTCNARLDETARIDHRSLEDQGSDLEPTIHEGYAARAIERAGGVSERCQTNREIRRSNSLLTAVRAE
LGRIFDRLGELFAAKIRQLRQRQARPEPAREPNWRYFEGDARRQLEADKADHTAAIRGKLMDARADVGNR
EEWWRSHGTEEHEAAKQIIDVARAASREARDANIFKRGRLLRNAEQVAGEQSEKLRGAVPWLEDTDIPAD
WDQANRFRMRTTKAIHDHDMQPRTRLVAELERRLEQAERAESEKPSPEQVKALALRMAEQRAQAENPTQD
TKRPAPSGDEPLDLSEPEDWGEASPFESRQAPRTKADLLNEIRQRTDRLTGQQEAEQRQIDPWSAQPPQR
RGHGR

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(19-253)


  Protein structure


Source ID Structure
AlphaFold DB S6BIT5


Host bacterium

ID   1000 GenBank   NC_021875
Plasmid name   pBBKW-1 Incompatibility group   _
Plasmid size   7716 bp Coordinate of oriT [Strand]   3922..3953 [+]; 7606..7637 [+]
Host baterium   Bifidobacterium catenulatum subsp. kashiwanohense JCM 15439 = DSM 21854

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -