Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   100538
Name   oriT_pSEEH1578_03 in_silico
Organism   Salmonella enterica subsp. enterica serovar Heidelberg str. 41578
Sequence Completeness      intact
NCBI accession of oriT (coordinates [strand])   NC_021869 (2905..3090 [+], 186 nt)
oriT length   186 nt
IRs (inverted repeats)      14..21, 25..32  (TTCGGGGC..GCCCTGAA)
Location of nic site      65..66
Conserved sequence flanking the
  nic site    		  CTGG|CTCA
Note   predicted by the oriTfinder

  oriT sequence  


Download         Length: 186 nt

>oriT_pSEEH1578_03
GGTTTTAGCAGGTTTCGGGGCGCAGCCCTGAACCAGTCACGTAGCGCTAGCGGAGTGTATACTGGCTCAATATGTTACGGCGGAGTAACACGTAATGAAAGTGCTTCATGTGGCAGGAGAAAAATGCAGCTGCAGGGCGTACAGGAGAAAATGGAGGTTACGGTGATATGACGCCTCCTCGCTCAC

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   609 GenBank   WP_000635829
Name   Nuclease_pSEEH1578_03 insolico UniProt ID   _
Length   499 a.a. PDB ID   
Note   putative relaxase

  Relaxase protein sequence


Download         Length: 499 a.a.        Molecular weight: 55247.59 Da        Isoelectric Point: 8.6717

>WP_000635829.1 nuclease [Salmonella enterica]
MIVKFHPRGRGGGAGPVDYLLGKDRQRDGATVLQGKPEEVRELIDASPYAKKYTSGVLSFAEKDLPPGQR
EKLMASFERVLMPGLDKDQYSVLWVEHQDKGRLELNFLIPNMELLTGRRLQPYYDRADRPRIDAWQTIVN
GRLGLHDPNAPENRRALVTPSALPKTKQEAAQAITRGLLALASSGGLKTRQDVTEALESAGFEVVRTTKS
SISIADPDGGRNIRLKGAIYEQSFNAGEGLRAEIESAAAEYRRDAESRIQRAREVCQSGTERKREENQRR
HPRPRPEAVLSHEPAHERHGAYGQPDVADHRPGVYTADSIGRKHSMVAGTADTRQLHDHPGAEEHAGHAV
REEQRRADLDLRRAETPLREGEPGSGTVRRGFELDDTGGEIAHDGAGKTVAERIRAATAGLLEKAGRVGE
RLRGMADDVWSYATGERGAERARHGLEQAGAEFERAAAPVVTRLNVIEAHREQERAAQHQKALELERSQR
QRTYNGPSL

  Protein domains


Predicted by InterproScan.

Relaxase/Mobilisation nuclease domain (Relaxase)

(57-238)


  Protein structure



No available structure.




Host bacterium

ID   999 GenBank   NC_021869
Plasmid name   pSEEH1578_03 Incompatibility group   Col440II
Plasmid size   4773 bp Coordinate of oriT [Strand]   2905..3090 [+]
Host baterium   Salmonella enterica subsp. enterica serovar Heidelberg str. 41578

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -