Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   100537
Name   oriT_pCFSAN001921-2 in_silico
Organism   Salmonella enterica subsp. enterica serovar Typhimurium var. 5- str. CFSAN001921
Sequence Completeness      intact
NCBI accession of oriT (coordinates [strand])   NC_021843 (2975..3155 [+], 181 nt)
oriT length   181 nt
IRs (inverted repeats)      10..17, 21..28  (TTCGGGGC..GCCCTGAA)
Location of nic site      61..62
Conserved sequence flanking the
  nic site    		  CTGG|CTTA
Note   predicted by the oriTfinder

  oriT sequence  


Download         Length: 181 nt

>oriT_pCFSAN001921-2
TTAGCGGGTTTCGGGGCGCAGCCCTGAACCAGTCACGTAGCGCTAGCGGAGTGTATACTGGCTTAATATAGTAAATCGAAGTGGGAATTCAGGGAAGTGCTTCATGTGACAGAGGAAAAATGCGGCTGTGGGGCGTAAGTGCAGAATGTAGGTAAAAGTGAAATGACGCCTCCTCGCTCAC

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   608 GenBank   WP_020833678
Name   PutativerelaxaseofpCFSAN001921-2 insolico UniProt ID   _
Length   499 a.a. PDB ID   
Note   putative relaxase

  Relaxase protein sequence


Download         Length: 499 a.a.        Molecular weight: 55206.23 Da        Isoelectric Point: 7.0656

>WP_020833678.1 relaxase/mobilization nuclease domain-containing protein [Salmonella enterica]
MIVKFHPRGRGGGAGPVDYLLGKDRHRDGASVLQGKPEEVRELIDASPYAKKYTSGVLSFAEQDLPPGQR
EKLMASFERVLMPGLDKDQYSVLWVEHNDKGRLELNFLIPNTELLTGRRLQPYYDRADRPRIDAWQTIVN
GRLGLHDPNAPENRRALATPSALPETKQEAAQTITRGLLALASSGELKTRQDVTEALENAGFEVVRTTKS
SISIADPDGGRNIRLKGAIYEQSFNAGEGLRAEIESAAADYRRDAESRIQRAREVCQSGTERKREENQRR
HPRPRPEAVLSHEPAHERDAAHGQPDVADHRAGLRAADRLERGHSVVAGAADTRELHDHPGAEEHAGHAV
REEQRCAAHDLRRAETPLREGEPGSGRVRRGFELDDTGGEIAHDGAGKTAAERIRAATAGLLEKAGRVGE
RLRGMADDVWSYATGERGAERARHGLEQAGAEFERAASPVVVRLDGIEAHREHERAVQHQKTLELERSQR
QRTYNGPSL

  Protein domains


Predicted by InterproScan.

Relaxase/Mobilisation nuclease domain (Relaxase)

(57-238)


  Protein structure



No available structure.




Host bacterium

ID   998 GenBank   NC_021843
Plasmid name   pCFSAN001921-2 Incompatibility group   Col440II
Plasmid size   4675 bp Coordinate of oriT [Strand]   2975..3155 [+]
Host baterium   Salmonella enterica subsp. enterica serovar Typhimurium var. 5- str. CFSAN001921

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -