Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   100531
Name   oriT_pDB2011 in_silico
Organism   Listeria innocua
Sequence Completeness      core
NCBI accession of oriT (coordinates [strand])   NC_021513 (7563..7601 [+], 39 nt)
oriT length   39 nt
IRs (inverted repeats)      1..6, 11..16  (CTTTAC..GTAAAG)
Location of nic site      25..26
Conserved sequence flanking the
  nic site    		  GTG|TTA
Note   predicted by the oriTfinder

  oriT sequence  


Download         Length: 39 nt

>oriT_pDB2011
CTTTACGAATGTAAAGTATAGTGTGTTATACTTTACATG

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   602 GenBank   YP_008119849
Name   Mob_pDB2011 insolico UniProt ID   R9SAC3
Length   408 a.a. PDB ID   
Note   putative relaxase

  Relaxase protein sequence


Download         Length: 408 a.a.        Molecular weight: 48111.40 Da        Isoelectric Point: 7.4555

>YP_008119849.1 putative recombination/mobilization protein (plasmid) [Listeria innocua]
MSMIAARMQKLKAGNLVGIGNHNQRKTKNHSNPDIDTSLSKLNYDLVDRTQNYKTDIENFINENKSTTRA
VRKDAVLVNEWIISSDKDFFDNLTESEIENFFERSKDYFAEKFGEKNIRYATVHLDESTPHMHMGIVPFD
KDNKLSAKRVFNRQALRDVQEELPKYLQDFQFEIARGQKGSERKNLTVPEFKKLKEEELEIKKELQIKKD
ELIAYTKENQIDKKLDITPIKEMEDIEIETDEKTLFGKNKTEIVRQWTGNIILSENDYLKLNKEIKKGKK
TEGRLAAILETDVYQENKELKNELKDQIDKNDKDIDDYNDLVKRYNNLYEENTSLKSQIGDLKEEIKLIY
QSTKRFLKDRISDFKAFKEVFKELADNISNISREKGLDSSFKKEFDRENKKKQTRGIR

  Protein domains


Predicted by InterproScan.

Plasmid recombination enzyme (Mob_Pre)

(2-193)


  Protein structure


Source ID Structure
AlphaFold DB R9SAC3


Host bacterium

ID   992 GenBank   NC_021513
Plasmid name   pDB2011 Incompatibility group   _
Plasmid size   7641 bp Coordinate of oriT [Strand]   7563..7601 [+]
Host baterium   Listeria innocua

Cargo genes

Drug resistance gene   ant(9)-Ia, erm(A), dfrD
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -