Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   100528
Name   oriT_pCSA2 in_silico
Organism   Cronobacter sakazakii
Sequence Completeness      intact
NCBI accession of oriT (coordinates [strand])   NC_021293 (2481..2654 [-], 174 nt)
oriT length   174 nt
IRs (inverted repeats)      2..11, 15..24  (GTTTCGGGGC..GCCCTGAACC)
Location of nic site      55..56
Conserved sequence flanking the
  nic site    		  CTGG|CTTA
Note   predicted by the oriTfinder

  oriT sequence  


Download         Length: 174 nt

>oriT_pCSA2
GGTTTCGGGGCGCAGCCCTGAACCAGTCACGTAGCGCTAGCGGAGTGTATACTGGCTTACTATGTTGGCACGGATGCGAATATCAGTGAAGTGCTTCATGTGGCAGGAGAAAAATGCAGCAGCGGAGCGTCAGCAGAATATGCGATACAGGATATATTCCGCTTCCTCGCTCAC

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   599 GenBank   YP_008047259
Name   Mob_pCSA2 insolico UniProt ID   _
Length   573 a.a. PDB ID   
Note   putative relaxase

  Relaxase protein sequence


Download         Length: 573 a.a.        Molecular weight: 63160.50 Da        Isoelectric Point: 9.0301

>YP_008047259.1 mobilization protein A (plasmid) [Cronobacter sakazakii]
MPGLSGCGTPFLRKERTMIVKFHPRGRGGGAGPVDYLLGKDRQREGASVLQGKPEEVRELIDASPYVKKY
TSGVLSFAEADLPPGQREKLMASFERVLMPGLDKDQYSILWVEHEDKGRLELNFLIPNTELLTGRRLQPY
YDRADRPRIDAWQTIVNGRLGLHDPNAPENRRALVTPAGLPKTKQEAAEAITRGLLSLASSGELKSRQDV
TEALEGAGFEVVRTTKSSISIADPDGGRNIRLKGAIYEQSFNAGEGLRAAIESAAEEYRRDAESRIQRAR
AVCQSGTERKREENQRRHQRPRAEYERGDGEKPAERVADGREDMAHHPDGVSAADRHEREHSVVAGTADN
RQLHTSSSAGRYPGENDRPDVGSTLSGEQRRPEVPYPAAGDASRSHPLRRDDLDPPETGVAENDRAGKAV
AERIRAATAGLLRARRPEVPYPAAGDASRSHPLRRDDLDPPETGVAENDRAGKAVAERIRAATAGLLAKA
GRMGERLRGMAEHVWTYATGERGAERARVGLEHAGAEFKRAAAPLVRELNAIEEKAALEYQRQNELELTL
RQKQKSFDGPKMR

  Protein domains


Predicted by InterproScan.

Relaxase/Mobilisation nuclease domain (Relaxase)

(74-255)


  Protein structure



No available structure.




Host bacterium

ID   989 GenBank   NC_021293
Plasmid name   pCSA2 Incompatibility group   ColRNAI
Plasmid size   4938 bp Coordinate of oriT [Strand]   2481..2654 [-]
Host baterium   Cronobacter sakazakii

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -