Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   100527
Name   oriT_pSA8589 in_silico
Organism   Staphylococcus aureus
Sequence Completeness      core
NCBI accession of oriT (coordinates [strand])   NC_021230 (3535..3575 [+], 41 nt)
oriT length   41 nt
IRs (inverted repeats)      2..8, 13..19  (ACTTTAT..ATAAAGT)
Location of nic site      27..28
Conserved sequence flanking the
  nic site    		  GTG|TTA
Note   predicted by the oriTfinder

  oriT sequence  


Download         Length: 41 nt

>oriT_pSA8589
CACTTTATGAATATAAAGTATAGTGTGTTATACTTTACATG

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   598 GenBank   YP_007988854
Name   Mob_pSA8589 insolico UniProt ID   R4NGV8
Length   408 a.a. PDB ID   
Note   putative relaxase

  Relaxase protein sequence


Download         Length: 408 a.a.        Molecular weight: 48229.55 Da        Isoelectric Point: 7.0097

>YP_007988854.1 recombination/mobilization protein (plasmid) [Staphylococcus aureus]
MSMIVARMQKMKAENLVGIGNHNQRKTKNHSNPDIDTSLSKLNYDLVDRTQNYKTDIENFINENKSTTRA
VRKDAVLVNEWIISSDKDFFDNLTESEIENFFERSKDYFAEKFGEKNIRYATVHLDESTPHMHMGIVPFD
KDNKLSAKRVFNRQALRDVQEELPKYLQDFQFEIARGQKGSERKNLTVPEFKKLKEEELEIKKELQIKKD
ELIAYTKENQIDKKLDITPIKEMEDIEIETDEKTLFGKNKTEIVRQWTGNIILSENDYLKLNKEIKKGKK
TEGRLAAILETDVYQENKELKNELKDQIDKNDKDIDDYNDLVKRYNNLYEENTSLKSQIGDLKEEIKLIY
QSTKRFLKDRISDFKAFKEVFKELADNISNISREKGLDSSFKKEFDRENKKKQTRGIR

  Protein domains


Predicted by InterproScan.

Plasmid recombination enzyme (Mob_Pre)

(1-193)


  Protein structure


Source ID Structure
AlphaFold DB R4NGV8


Host bacterium

ID   988 GenBank   NC_021230
Plasmid name   pSA8589 Incompatibility group   _
Plasmid size   6962 bp Coordinate of oriT [Strand]   3535..3575 [+]
Host baterium   Staphylococcus aureus

Cargo genes

Drug resistance gene   cfr
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -