Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   100509
Name   oriT_pAbNDM-1 in_silico
Organism   Acinetobacter baumannii ZW85-1
Sequence Completeness      incomplete
NCBI accession of oriT (coordinates [strand])   NC_019985 (259..296 [+], 38 nt)
oriT length   38 nt
IRs (inverted repeats)      8..17, 21..30  (CATAAGGGAA..TTCCCTTATG)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   predicted by the oriTfinder

  oriT sequence  


Download         Length: 38 nt

>oriT_pAbNDM-1
AGGGATTCATAAGGGAATTATTCCCTTATGTGGGGCTT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   580 GenBank   WP_017480453
Name   TraA_pAbNDM-1 insolico UniProt ID   _
Length   970 a.a. PDB ID   
Note   putative relaxase

  Relaxase protein sequence


Download         Length: 970 a.a.        Molecular weight: 110764.85 Da        Isoelectric Point: 8.1822

>WP_017480453.1 MULTISPECIES: AAA family ATPase [Gammaproteobacteria]
MAIYHLSVKTGRQYGSTGTRGANHYAYINRDGKYKRDDLENIKSGNLPSWATDAKHFWKSADKNERINGR
VYTELEISLPRELNKEQREELVEKFVEKTLGENFTYSYAIHSPLASDGQQNPHVHLMFSERKLDGIERDE
VKHFKRYNPVNPEKGGAGKDRYFSSKMFVVDTRLEWANHVNDFCENLGIDARIDHRSFKEQGIELSSQNF
RADYVSSHKYHINENIKQVRHQNGEIIIERPSEAIKALTSNQSVFSVRELERFLMAHTDGEEQYLKAYES
VITCPDMATLYGKDKVVFSSKELVGIEESISTFIYNANEESRIQKPFNLVEKLPLNAVRVAETRTFNSEQ
EKAFYTLTSTDRITLLNGSAGTGKSYVLSAVSEAYKESDYQVYGIALQAITAKAIANDCDIPSSTIASFL
SKYDSGNLEINNKTVLILDEAGMVGSRDMQRLLMLVEKHDAQIKLVGDSYQLSAVSAGHVFANIQENLDK
KNIASLEDIQRQKHAKESDKMIQASKYLSKHEVGKAIDIYKSINMVNEYESHDLALAKTVKSWSEDSSES
KLMLAHSNSDVNELNRMARALLIKQGKLNPESVSVKNYQGDLDISIGEKIVFKQNNSQMKVSNGELAKVI
GFEKDKFNNPKAMMVQMESDSRIVRVDLKEYDQFKHGYANTIHSSQGMTVDSAYIVASENMNANLTYVAL
TRHKQNIQINYSALTFATNEKETVKTPDGKVSYDHNYKPVEREVTAFENFKKVLGRSETKEFSTDFTLVE
SKDNLMKSYLNDHRLHLENKRELFGINSKLYSLTSENKTFTKEEIVSEVRASLKSKALLGDEIVKFNGNM
NIAKGELVKLTNDLEIKTGLFKKVTFEKGTELKVIDAYKVKDKPVMKARIKNEEYEIPFNKLNLEYSDKY
FNEFKDQSKARFDSRHKTEVYTEFREQLLKQKANAPKDNLNAPNQRIKNPNTPNRNTPKY

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(43-208)

AAA domain (AAA_30)

(346-538)

Viral (Superfamily 1) RNA helicase (Viral_helicase1)

(661-709)


  Protein structure



No available structure.




T4SS

T4SS were predicted by using oriTfinder2.

Region 1: 23810..37105

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
P795_RS18240 (D721_p4020) 19688..20335 - 648 WP_004993315 recombinase family protein -
P795_RS18245 (D721_p4021) 20487..20711 + 225 WP_015056389 hypothetical protein -
P795_RS18760 20895..22607 + 1713 WP_015060705 zeta toxin family protein -
P795_RS18260 (D721_p4023) 22604..23086 - 483 WP_015060706 thermonuclease family protein -
P795_RS18265 (D721_p4024) 23286..23747 - 462 WP_015060707 hypothetical protein -
P795_RS18270 (D721_p4025) 23810..24451 - 642 WP_004999358 type IV secretion system protein virB5
P795_RS18275 (D721_p4026) 24448..27159 - 2712 WP_015060708 VirB4 virb4
P795_RS18280 (D721_p4027) 27171..27464 - 294 WP_017480461 TrbC/VirB2 family protein virB2
P795_RS18285 (D721_p4028) 27475..28185 - 711 WP_017480462 lytic transglycosylase domain-containing protein -
P795_RS18290 (D721_p4029) 28230..28430 - 201 WP_004999346 hypothetical protein -
P795_RS18295 (D721_p4030) 28449..29966 - 1518 WP_015060710 type IV secretion system DNA-binding domain-containing protein virb4
P795_RS18300 (D721_p4031) 29963..31210 - 1248 WP_017480463 lytic transglycosylase domain-containing protein -
P795_RS18305 (D721_p4032) 31292..31744 - 453 WP_004999340 hypothetical protein -
P795_RS18310 (D721_p4033) 31748..32077 - 330 WP_004999338 hypothetical protein -
P795_RS18315 (D721_p4034) 32046..33083 - 1038 WP_015060713 P-type DNA transfer ATPase VirB11 virB11
P795_RS18320 (D721_p4035) 33099..34478 - 1380 WP_005000433 TrbI/VirB10 family protein virB10
P795_RS18325 (D721_p4036) 34480..35217 - 738 WP_005000435 TrbG/VirB9 family P-type conjugative transfer protein virB9
P795_RS18330 (D721_p4037) 35232..36020 - 789 WP_005000436 VirB8/TrbF family protein virB8
P795_RS18335 (D721_p4038) 36020..37105 - 1086 WP_005000437 type IV secretion system protein virB6
P795_RS18340 (D721_p4039) 37113..37532 - 420 WP_005000439 hypothetical protein -
P795_RS18345 (D721_p4040) 37519..37890 - 372 WP_005000442 hypothetical protein -
P795_RS18355 39512..39751 + 240 WP_005000443 hypothetical protein -
P795_RS18360 (D721_p4041) 39768..40457 + 690 WP_005000446 ParA family partition ATPase -
P795_RS18365 (D721_p4042) 40454..40858 + 405 WP_005000449 hypothetical protein -

Host bacterium

ID   970 GenBank   NC_019985
Plasmid name   pAbNDM-1 Incompatibility group   _
Plasmid size   48368 bp Coordinate of oriT [Strand]   259..296 [+]
Host baterium   Acinetobacter baumannii ZW85-1

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -