Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 100502 |
| Name | oriT_p5580  |
| Organism | Streptococcus dysgalactiae subsp. equisimilis |
| Sequence Completeness | core |
| NCBI accession of oriT (coordinates [strand]) | NC_019370 (879..917 [-], 39 nt) |
| oriT length | 39 nt |
| IRs (inverted repeats) | 3..10, 14..20 (ACATTTAC..GTAAAGT) |
| Location of nic site | 28..29 |
| Conserved sequence flanking the nic site |
GCG|TTA |
| Note | predicted by the oriTfinder |
oriT sequence
Download Length: 39 nt
>oriT_p5580
GCACATTTACGAAGTAAAGTATAGTGCGTTATACTTTAC
GCACATTTACGAAGTAAAGTATAGTGCGTTATACTTTAC
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 573 | GenBank | YP_006965545 |
| Name | Mob_p5580 |
UniProt ID | K0KVT0 |
| Length | 500 a.a. | PDB ID | |
| Note | putative relaxase | ||
Relaxase protein sequence
Download Length: 500 a.a. Molecular weight: 58463.75 Da Isoelectric Point: 6.0256
>YP_006965545.1 plasmid mobilization protein (plasmid) [Streptococcus dysgalactiae subsp. equisimilis]
MSYLVARMQKMKVGNLGGAYRHNERVFENHSNKDIDTSRSHLNYELTDRDRSVSYEKQIKDYVNEKKSSK
RAIRKDAVLCDEWIITSDKDFFERLDQEQTRAFFETAKNYFAERYGLENIAYASVHLDESTPHMHMGVVP
MVDGKLSSKAVFTREELKAIQEELPKYMNEQGFELSRGQLGSDKKHLSVADYKAKIGKEALNKELLGLGA
PRYWHKEEDRPATAEEIAGYESLASLFAGEEMKLREATLEERFTWLDSHRNDLKGDLSHLEELVDKKIEE
YTRIDSEASERLSELSELNSKVKDREKELRGLESDSERLSDKVVRLEKEHRETTQLLVEQNRNLRKISFQ
DLDRRRIAEDLHEELEKATPKLFGGSFNFTADFVGRLKTFMSEVVEKLEQVINQNEVLRKALEGMKQAKE
RAERELLQEEWKTQRLETENQNLRQENKELKVSKNLLEDIQEVITEKEVSSLNKRLDELREARMASKRGY
EPKRSKGRSI
MSYLVARMQKMKVGNLGGAYRHNERVFENHSNKDIDTSRSHLNYELTDRDRSVSYEKQIKDYVNEKKSSK
RAIRKDAVLCDEWIITSDKDFFERLDQEQTRAFFETAKNYFAERYGLENIAYASVHLDESTPHMHMGVVP
MVDGKLSSKAVFTREELKAIQEELPKYMNEQGFELSRGQLGSDKKHLSVADYKAKIGKEALNKELLGLGA
PRYWHKEEDRPATAEEIAGYESLASLFAGEEMKLREATLEERFTWLDSHRNDLKGDLSHLEELVDKKIEE
YTRIDSEASERLSELSELNSKVKDREKELRGLESDSERLSDKVVRLEKEHRETTQLLVEQNRNLRKISFQ
DLDRRRIAEDLHEELEKATPKLFGGSFNFTADFVGRLKTFMSEVVEKLEQVINQNEVLRKALEGMKQAKE
RAERELLQEEWKTQRLETENQNLRQENKELKVSKNLLEDIQEVITEKEVSSLNKRLDELREARMASKRGY
EPKRSKGRSI
Protein domains
Predicted by InterproScan.
Protein structure
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | K0KVT0 |
Host bacterium
| ID | 963 | GenBank | NC_019370 |
| Plasmid name | p5580 | Incompatibility group | _ |
| Plasmid size | 4950 bp | Coordinate of oriT [Strand] | 879..917 [-] |
| Host baterium | Streptococcus dysgalactiae subsp. equisimilis |
Cargo genes
| Drug resistance gene | erm(T) |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |