Detailed information of oriT

oriT


The information of the oriT region


oriTDB ID   100492
Name   oriT_pUR3937 in_silico
Organism   Staphylococcus epidermidis
Sequence Completeness      intact
NCBI accession of oriT (coordinates [strand])   NC_019304 (4..207 [-], 204 nt)
oriT length   204 nt
IRs (inverted repeats)      IR1: 51..58, 60..67  (TTGGGGAT..ATCCCCAA)
  IR2: 93..97, 103..107  (TGGCT..AGCCA)
Location of nic site      114..115
Conserved sequence flanking the
  nic site  
 
 TGCTTG|CCA
Note   predicted by the oriTfinder

  oriT sequence  


Download         Length: 204 nt

>oriT_pUR3937
TGGCTAGCAATTAGCCACTCTTTTTTGCGTAAGCAAAAAACATAAGGGGCTTGGGGATAATCCCCAACAAGCTGGCGCGTCTGCCACGTTAGTGGCTAGCAAAGCCAATGCTTGCCAAACCACTTAACGACTTGATAAATTTTGCTTTATCTTATAAAGTAAAATTTAAGAAAGGCGTTATCTTTCGTAGAAAGCGTGGTGGGA

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase


ID   563 GenBank   YP_006962162
Name   Mob_pUR3937 insolico UniProt ID   I0B6K6
Length   336 a.a. PDB ID   
Note   putative relaxase

  Relaxase protein sequence


Download         Length: 336 a.a.        Molecular weight: 38414.55 Da        Isoelectric Point: 9.8063

>YP_006962162.1 mobilization protein (plasmid) [Staphylococcus epidermidis]
MATTKLSATKSTSRAINYAEKRAVEKSGLNCDVDYAKSSFKAARELYGKTDGNQGHVIIQSFQPGEVTPE
QCNQLGLALAEKLVPNHQVAVYTHADTNHVHNHIVLNSIDLNTGKKFNNNKQALRDVRAFNDEVCRAQGL
SVPEKDTARLRYTQTEKAIADPNTTSTAQYSWKDDIREAIDQSTATNMEEFQKHLNQHGITIERVTPKSI
TYRHLAENKKVRGRKLGEDYNKGGIQHGFERQIQRRQQQKHKSDTNFQPKRSTSNRHESTERDTGVTQSD
WDQFAQDTNELERRRQAAESARLVDEKARRDREKRVREKPTSRPIINIDRDHGLEL

  Protein domains


Predicted by InterproScan.

(9-242)


  Protein structure


Source ID Structure
AlphaFold DB I0B6K6


Host bacterium


ID   953 GenBank   NC_019304
Plasmid name   pUR3937 Incompatibility group   _
Plasmid size   7082 bp Coordinate of oriT [Strand]   4..207 [-]
Host baterium   Staphylococcus epidermidis

Cargo genes


Drug resistance gene   vga(A)LC
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -