Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   100478
Name   oriT_pMSA16 in_silico
Organism   Staphylococcus aureus
Sequence Completeness      core
NCBI accession of oriT (coordinates [strand])   NC_019144 (2524..2564 [+], 41 nt)
oriT length   41 nt
IRs (inverted repeats)      2..8, 13..19  (ACTTTAT..ATAAAGT)
Location of nic site      27..28
Conserved sequence flanking the
  nic site    		  GTG|CTA
Note   predicted by the oriTfinder

  oriT sequence  


Download         Length: 41 nt

>oriT_pMSA16
CACTTTATGGATATAAAGTATAGTGTGCTATACTTTACATG

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   549 GenBank   YP_006958114
Name   Mob_pMSA16 insolico UniProt ID   H9C6Q0
Length   376 a.a. PDB ID   
Note   putative relaxase

  Relaxase protein sequence


Download         Length: 376 a.a.        Molecular weight: 44646.69 Da        Isoelectric Point: 9.4531

>YP_006958114.1 recombination-mobilization protein (plasmid) [Staphylococcus aureus]
MDIKYSVLYFTWKLTEIRGRVFVSFAVVRMQKMKSPDLKGMQFHNQRERESRTNPDIDPDREHLNYDLLH
QEKIDYNQQVKAIIESQKVSERKTRKDAVLVNELLVTSDRKFFDGLDPAEQKRFFEESHKLFSERYGKQN
IAYATVHNDEKTPHMHLGVVPMRDGKLQGKNVFNRQELQWMQEEFPKHMQSVGFEVERGIASDRKHIEMS
RFKALTLNEEIKTLEKETEALRNALTASKKVDELQVTKPSLFDRNHVKLPVEDFEALKARAKATEAIERT
IEAHEKRFDDMVDNVIDSDRKLDQEKRKTAQLQKENNGLKKENLDLQKENKTLKSQLNVLMEFAKSQLEK
FKEWQKERQQEKENNIARKRDQELER

  Protein domains


Predicted by InterproScan.

Plasmid recombination enzyme (Mob_Pre)

(25-214)


  Protein structure


Source ID Structure
AlphaFold DB H9C6Q0


Host bacterium

ID   939 GenBank   NC_019144
Plasmid name   pMSA16 Incompatibility group   _
Plasmid size   7054 bp Coordinate of oriT [Strand]   2524..2564 [+]
Host baterium   Staphylococcus aureus

Cargo genes

Drug resistance gene   erm(A), cfr
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -