Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 100476 |
| Name | oriT_pSD5.6  |
| Organism | Salmonella enterica subsp. enterica serovar Derby |
| Sequence Completeness | intact |
| NCBI accession of oriT (coordinates [strand]) | NC_019136 (3621..3703 [+], 83 nt) |
| oriT length | 83 nt |
| IRs (inverted repeats) | 3..12, 16..25 (GTGTCGGGGC..GCCCTGACCC) |
| Location of nic site | 56..57 |
| Conserved sequence flanking the nic site |
CTGG|CTTA |
| Note | predicted by the oriTfinder |
oriT sequence
Download Length: 83 nt
>oriT_pSD5.6
GGGTGTCGGGGCGCAGCCCTGACCCAGTCACGTAGCGATAGCGGAGTGTATACTGGCTTACTTATTCGGCATCAGGGCGCATT
GGGTGTCGGGGCGCAGCCCTGACCCAGTCACGTAGCGATAGCGGAGTGTATACTGGCTTACTTATTCGGCATCAGGGCGCATT
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 547 | GenBank | YP_006957910 |
| Name | MbeA_pSD5.6 |
UniProt ID | K4JYQ1 |
| Length | 517 a.a. | PDB ID | |
| Note | putative relaxase | ||
Relaxase protein sequence
Download Length: 517 a.a. Molecular weight: 57896.36 Da Isoelectric Point: 5.9282
>YP_006957910.1 mobilization protein MbeA (plasmid) [Salmonella enterica subsp. enterica serovar Derby]
MIVKFHARGKGGGSGPVDYLLGRERNREGATVLQGNPEEVRELIDATPFAKKYTSGVLSFAEKELPPGGR
EKVMASFERVLMPGLEKNQYSILWVEHQDKGRLELNFVIPNMELQSGKRLQPYYDRADRPRIDAWQTLVN
HHYGLHDPNAPENRRILTLPDNLPKTKQALAESVTRGIDALYHVGEIKGRQDVIQALTEAGIEVVRVTRS
SISIADPNGGRNIRLKGAFYEQSFTDGRGVREKAERESRIYRENAEQRVQEARRVCQRGCDLKRDENQRR
YSPVHSLDREIAGKTPGRGERGDDAAQEGRVKAGREYGHDVTGDSLSPVYSEWRDALVSWREDTGEPGRN
QEAGRDIAETEREDMGRGVCAGREQEIPCPSVREISGGDSLSGERVGTSEGVTQSDRAGNTFAERLRAAA
TGLYAAAERMGERLRGIAEDVFAYATGQRDAERAGHAVESAGAALERADRTLEPVIQRELEIREERLIQE
REHVLSLERERQPEIQERTLDGPSLGW
MIVKFHARGKGGGSGPVDYLLGRERNREGATVLQGNPEEVRELIDATPFAKKYTSGVLSFAEKELPPGGR
EKVMASFERVLMPGLEKNQYSILWVEHQDKGRLELNFVIPNMELQSGKRLQPYYDRADRPRIDAWQTLVN
HHYGLHDPNAPENRRILTLPDNLPKTKQALAESVTRGIDALYHVGEIKGRQDVIQALTEAGIEVVRVTRS
SISIADPNGGRNIRLKGAFYEQSFTDGRGVREKAERESRIYRENAEQRVQEARRVCQRGCDLKRDENQRR
YSPVHSLDREIAGKTPGRGERGDDAAQEGRVKAGREYGHDVTGDSLSPVYSEWRDALVSWREDTGEPGRN
QEAGRDIAETEREDMGRGVCAGREQEIPCPSVREISGGDSLSGERVGTSEGVTQSDRAGNTFAERLRAAA
TGLYAAAERMGERLRGIAEDVFAYATGQRDAERAGHAVESAGAALERADRTLEPVIQRELEIREERLIQE
REHVLSLERERQPEIQERTLDGPSLGW
Protein domains
Predicted by InterproScan.
Protein structure
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | K4JYQ1 |
Host bacterium
| ID | 937 | GenBank | NC_019136 |
| Plasmid name | pSD5.6 | Incompatibility group | ColRNAI |
| Plasmid size | 5687 bp | Coordinate of oriT [Strand] | 3621..3703 [+] |
| Host baterium | Salmonella enterica subsp. enterica serovar Derby |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |