Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 100475 |
| Name | oriT_pSD4.6  |
| Organism | Salmonella enterica subsp. enterica serovar Derby |
| Sequence Completeness | intact |
| NCBI accession of oriT (coordinates [strand]) | NC_019135 (4254..4427 [+], 174 nt) |
| oriT length | 174 nt |
| IRs (inverted repeats) | 2..11, 15..24 (GTTTCGGGGC..GCCCTGAACC) |
| Location of nic site | 55..56 |
| Conserved sequence flanking the nic site |
CTGG|CTTA |
| Note | predicted by the oriTfinder |
oriT sequence
Download Length: 174 nt
>oriT_pSD4.6
GGTTTCGGGGCGCAGCCCTGAACCAGTCACGTAGCGCTAGCGGAGTGTATACTGGCTTACTATGTTGGCACGGATGCGAGTGTCAGTGAAGTGCTTCATGTGGCAGGAGAAAAATGCAGCAGCGGAGCGTCAGCAGAATATGTGATACAGGATATATTCCGCTTCCTCGCTCAC
GGTTTCGGGGCGCAGCCCTGAACCAGTCACGTAGCGCTAGCGGAGTGTATACTGGCTTACTATGTTGGCACGGATGCGAGTGTCAGTGAAGTGCTTCATGTGGCAGGAGAAAAATGCAGCAGCGGAGCGTCAGCAGAATATGTGATACAGGATATATTCCGCTTCCTCGCTCAC
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 546 | GenBank | YP_006957906 |
| Name | MobA_pSD4.6 |
UniProt ID | K4KBN0 |
| Length | 499 a.a. | PDB ID | |
| Note | putative relaxase | ||
Relaxase protein sequence
Download Length: 499 a.a. Molecular weight: 55380.75 Da Isoelectric Point: 8.2087
>YP_006957906.1 MobA-like protein (plasmid) [Salmonella enterica subsp. enterica serovar Derby]
MIVKFHPRGRGGGAGPVDYLLGKDRQREGATVLQGKPEEVRELIDASPYVKKYTSGVLSFAEADLPSGQR
EKLMASFERVLMPGLDKDQYSILWVEHRDKGRLELNFLIPNTELLTGRRLQPYYDRADRPRIDAWQTIVN
GRLGLHDPNAPENRRALVTPSALPKAKQEAAEAITRGLLALASSGELKTRQDVTEALESAGFEVVRTTKS
SISIADPDGGRNIRLKGAIYEQSFNAGEGLRAEIESAAAEYRRDAESRIQRAREICKSGTERKREENQRR
HPRPRPETVLSHEPAHERHGAHGQPDVADHRPGLRAADRLERGHSVVAGAADTRQLHDHPGAEEHAGHAV
REEQRRAALDLRRAETPLREGEPGSGTVRRGFELDDTGGEIAHDGAGKTVAERIRAATAGLLEKAGRVGE
RLRGMADDVWSYATGERSAERARHGLEQAGAEFERAAAPVVERLNAVELHREQERVVQHQKALELERSQR
QRTYNSPSL
MIVKFHPRGRGGGAGPVDYLLGKDRQREGATVLQGKPEEVRELIDASPYVKKYTSGVLSFAEADLPSGQR
EKLMASFERVLMPGLDKDQYSILWVEHRDKGRLELNFLIPNTELLTGRRLQPYYDRADRPRIDAWQTIVN
GRLGLHDPNAPENRRALVTPSALPKAKQEAAEAITRGLLALASSGELKTRQDVTEALESAGFEVVRTTKS
SISIADPDGGRNIRLKGAIYEQSFNAGEGLRAEIESAAAEYRRDAESRIQRAREICKSGTERKREENQRR
HPRPRPETVLSHEPAHERHGAHGQPDVADHRPGLRAADRLERGHSVVAGAADTRQLHDHPGAEEHAGHAV
REEQRRAALDLRRAETPLREGEPGSGTVRRGFELDDTGGEIAHDGAGKTVAERIRAATAGLLEKAGRVGE
RLRGMADDVWSYATGERSAERARHGLEQAGAEFERAAAPVVERLNAVELHREQERVVQHQKALELERSQR
QRTYNSPSL
Protein domains
Predicted by InterproScan.
Protein structure
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | K4KBN0 |
Host bacterium
| ID | 936 | GenBank | NC_019135 |
| Plasmid name | pSD4.6 | Incompatibility group | ColRNAI |
| Plasmid size | 4664 bp | Coordinate of oriT [Strand] | 4254..4427 [+] |
| Host baterium | Salmonella enterica subsp. enterica serovar Derby |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |