Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 100460 |
| Name | oriT_pSPI12  |
| Organism | Salmonella enterica subsp. enterica serovar Pullorum |
| Sequence Completeness | intact |
| NCBI accession of oriT (coordinates [strand]) | NC_019102 (990..1077 [-], 88 nt) |
| oriT length | 88 nt |
| IRs (inverted repeats) | 8..17, 21..30 (GTTTCGGGGC..GCCCTGAACC) |
| Location of nic site | 61..62 |
| Conserved sequence flanking the nic site |
CTGA|CTTA |
| Note | predicted by the oriTfinder |
oriT sequence
Download Length: 88 nt
>oriT_pSPI12
TCAGGGGGTTTCGGGGCGAAGCCCTGAACCAGTCACGTAGCGATAGCGGAGTGTATACTGACTTAACCATGCGGCATCAGTGCGGATT
TCAGGGGGTTTCGGGGCGAAGCCCTGAACCAGTCACGTAGCGATAGCGGAGTGTATACTGACTTAACCATGCGGCATCAGTGCGGATT
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 531 | GenBank | YP_006954659 |
| Name | MobA_pSPI12 |
UniProt ID | D5LN80 |
| Length | 517 a.a. | PDB ID | |
| Note | putative relaxase | ||
Relaxase protein sequence
Download Length: 517 a.a. Molecular weight: 58274.90 Da Isoelectric Point: 6.2901
>YP_006954659.1 mobilization protein MobA (plasmid) [Salmonella enterica subsp. enterica serovar Pullorum]
MIVKFHARGKGGGSGPVDYLLGRERNREGATVLQGNPEEVRELIDATPFAKKYTSGVLSFAEKELPPGGR
EKVMESFERVLMPGLEKNQYSILWVEHQDKGRLELNFVIPNMELQTGKRLQPYYDRADRPRIDAWQTLVN
HHYGLHDPNAPENRRTLTLPDNLPETKQALAESVTRGLEVLYHAGEIKGRQDVIQALTEVGLEVVRVTRS
SISIADPNGGRNIRLKGAFYEQYFTDGRGVREKAERESRIYRENAERRIQQARRICKRGCDLKRDENQRR
YSPVHNVDRGIAEKTPGRGERGDDAAPEGRVKAGREYGRDVTGDSLSPVYREWRDALVSWREDTDEPGRN
QGTGRDIAETEREDMGRGVCSGREKEISGPSVREISRGDALSGEGLDTTDGVIRNDRAGNTFAERLRAAA
TGLYAAAERMGERLRGIAEDVFAYATGQRDAERAGHAVESAGTALERADRTLEPVIQRELEIREERLIQE
REHALSLERERQLEIQERTLDGPSLSL
MIVKFHARGKGGGSGPVDYLLGRERNREGATVLQGNPEEVRELIDATPFAKKYTSGVLSFAEKELPPGGR
EKVMESFERVLMPGLEKNQYSILWVEHQDKGRLELNFVIPNMELQTGKRLQPYYDRADRPRIDAWQTLVN
HHYGLHDPNAPENRRTLTLPDNLPETKQALAESVTRGLEVLYHAGEIKGRQDVIQALTEVGLEVVRVTRS
SISIADPNGGRNIRLKGAFYEQYFTDGRGVREKAERESRIYRENAERRIQQARRICKRGCDLKRDENQRR
YSPVHNVDRGIAEKTPGRGERGDDAAPEGRVKAGREYGRDVTGDSLSPVYREWRDALVSWREDTDEPGRN
QGTGRDIAETEREDMGRGVCSGREKEISGPSVREISRGDALSGEGLDTTDGVIRNDRAGNTFAERLRAAA
TGLYAAAERMGERLRGIAEDVFAYATGQRDAERAGHAVESAGTALERADRTLEPVIQRELEIREERLIQE
REHALSLERERQLEIQERTLDGPSLSL
Protein domains
Predicted by InterproScan.
Protein structure
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | D5LN80 |
Host bacterium
| ID | 921 | GenBank | NC_019102 |
| Plasmid name | pSPI12 | Incompatibility group | ColRNAI |
| Plasmid size | 4080 bp | Coordinate of oriT [Strand] | 990..1077 [-] |
| Host baterium | Salmonella enterica subsp. enterica serovar Pullorum |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |