Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   100402
Name   oriT_pCV56C in_silico
Organism   Lactococcus lactis subsp. lactis CV56
Sequence Completeness      intact
NCBI accession of oriT (coordinates [strand])   NC_017484 (23520..23982 [-], 463 nt)
oriT length   463 nt
IRs (inverted repeats)      IR1: 137..146, 151..160  (CCCATTTTAT..ATCAAATGGG)
  IR2: 206..218, 222..234  (AAAAGTGGAAAGT..ACTTCCCCCTTTT)
  IR3: 241..254, 267..280  (ACATTGTAATACAA..TTGTATTACAATGT)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   predicted by the oriTfinder

  oriT sequence  


Download         Length: 463 nt

>oriT_pCV56C
TTAGTGGATGAACAAAAAAATTCGAAAGATTTTTTGTTCTTTCATCCATGATTTTAGAAAAAAGAGGGACGATTTCAGAAGACGAAATTCGTCTCTTTTTTTCTTCTTTTTGTATGACAAAAAGAAATATCTTTTGCCCATTTTATTTTTATCAAATGGGCAGCTGGCGTTTGCGTAAAGCAAATCAACACAATCCAAAGGGGATAAAAGTGGAAAGTGAAACTTCCCCCTTTTCAAGCCACATTGTAATACAAGAACGAAGTGATTTGTATTACAATGTAATAGCTTACCAGTATTTATGGTTTTATATTTTCTATTTTGTTATAATGATTGTAACCGAATAGGGCGCAATGCTTATTACAAAATCAATGACAAAGGGCGATTGACTAATGAGCGCTGAGGCATTTTATCTTTGAGGAAGTTCTTGATGGATCAGAAAAATGTATCACAAATTTAAACAAAG

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   473 GenBank   WP_014570287
Name   PriA_pCV56C insolico UniProt ID   _
Length   505 a.a. PDB ID   
Note   putative relaxase

  Relaxase protein sequence


Download         Length: 505 a.a.        Molecular weight: 59229.00 Da        Isoelectric Point: 7.3429

>WP_014570287.1 MULTISPECIES: relaxase/mobilization nuclease domain-containing protein [Lactococcus]
MTVIYMPKQSNGTVHSSKDLNQLIDYVMNPEKTNDFEYVSGQNILDIHSTCDEMLATRTMANALKNKPQK
NEIFGYHFVQSFSPDDHLTPEQVHEIGLKTMKEYLGSSAEFIIATHTDKPHLHNHIVLNATDPLTLNKFQ
QNKNDLERLKEISDKISKEYGCKIIVRPEQKLGNSHKNYLVYLAKNSYRKEIKNKLEFLMNHSHTWEDFK
TKARALNLKVDDTKKYTTYLLEGSEQTKKIRDRSLKNDKFLKENLKERIEKNTIGYSVDEVVKLWKDKES
IQEKNQEKEISILVEDWQIEKETENFLYVTIDTALDKEATIKIPARCVDKLENGDYQVFIKNKDRFSYLD
KKSPANNKIMYGTTVAKNLQRQSGNVPLYSDNANIKLKQVFHEFDFLISQGLGFDRSFETIGKDLKATYQ
ETEKQLDKLDTKIIEYVEQNKSLDYVDTTIRDTIKNLKLERDDLRDTLYKVDKNIQYYQKSEQRLEAYQK
NQSPKNKARDDDFEI

  Protein domains


Predicted by InterproScan.

Relaxase/Mobilisation nuclease domain (Relaxase)

(17-261)


  Protein structure



No available structure.




Host bacterium

ID   863 GenBank   NC_017484
Plasmid name   pCV56C Incompatibility group   _
Plasmid size   31442 bp Coordinate of oriT [Strand]   23520..23982 [-]
Host baterium   Lactococcus lactis subsp. lactis CV56

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -