Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   100398
Name   oriT_BLNIAS_P1 in_silico
Organism   Bifidobacterium longum subsp. longum KACC 91563
Sequence Completeness      core
NCBI accession of oriT (coordinates [strand])   NC_017220 (2918..2949 [+], 32 nt)
oriT length   32 nt
IRs (inverted repeats)      1..8, 12..19  (ATGCAACC..GGTTGCAT)
Location of nic site      28..29
Conserved sequence flanking the
  nic site    		  TAAGTGCG|CCCT
Note   predicted by the oriTfinder

  oriT sequence  


Download         Length: 32 nt

>oriT_BLNIAS_P1
ATGCAACCTCCGGTTGCATGTAAGTGCGCCCT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   469 GenBank   WP_014485224
Name   MobA_BLNIAS_P1 insolico UniProt ID   F8AUP8
Length   566 a.a. PDB ID   
Note   putative relaxase

  Relaxase protein sequence


Download         Length: 566 a.a.        Molecular weight: 64675.13 Da        Isoelectric Point: 9.3361

>WP_014485224.1 MobA/MobL family protein [Bifidobacterium longum]
MAIYHLSVSNVSRASGSKATATLSYITGKRVHDERRGETYDYGRKERVLRVGTLLPEGAPAEFADPAVLF
NAVELHETGRTARPAKKIVVALPREFTPRQRVQALEEYIRENLNADGYAATYAIHEDREGNNPHAHILVA
NRQIDPATGGWARLKQRMEYVLDERGERVPLIDPETGRQKTDKRGRRQWKRTSVSLNPLDRKAKLKALRE
SWAKTCNARLDETARIDHRSLEDQGSDLEPTIHEGYAARAIERAGGVSERCEANREIRRSNGLLTAIRTE
LGRIFDRLGELFAAKIRQLRQRQARPEPAREPNWRYFEGDARRQLEADRADHTAAIRGKLMGAKADVRNR
EEWWRSHGTEEFEAAKQIIDVARAASREARDANVFKRGRLLRNAEQVAGEQSEKLRGAVPWLEDTDIPSD
WDQANRFRMRATKAIHDHDMQPRTGLVDELERRLEQAERAEGEKPSPEQVKALALRMAEQRERAAEDPTQ
DMNRPEPSGDEPLDLSEPEDLGEGGPFEERSAPRTKADLLREIRQRADRRTGQQEAEQRQIDPWQAQPPQ
RRGHGR

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(19-253)


  Protein structure


Source ID Structure
AlphaFold DB F8AUP8


Host bacterium

ID   859 GenBank   NC_017220
Plasmid name   BLNIAS_P1 Incompatibility group   _
Plasmid size   4233 bp Coordinate of oriT [Strand]   2918..2949 [+]
Host baterium   Bifidobacterium longum subsp. longum KACC 91563

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -