Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   100384
Name   oriT_p9811071-1 in_silico
Organism   Staphylococcus hyicus
Sequence Completeness      core
NCBI accession of oriT (coordinates [strand])   NC_016139 (3520..3557 [-], 38 nt)
oriT length   38 nt
IRs (inverted repeats)      2..8, 13..19  (ACTTTAT..ATAAAGT)
Location of nic site      27..28
Conserved sequence flanking the
  nic site    		  GTG|TTA
Note   predicted by the oriTfinder

  oriT sequence  


Download         Length: 38 nt

>oriT_p9811071-1
CACTTTATGGATATAAAGTATAGTGTGTTATACTTTAC

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   455 GenBank   YP_004928115
Name   Pre/Mop_p9811071-1 insolico UniProt ID   G8EWI5
Length   441 a.a. PDB ID   
Note   putative relaxase

  Relaxase protein sequence


Download         Length: 441 a.a.        Molecular weight: 51975.98 Da        Isoelectric Point: 9.9596

>YP_004928115.1 Pre/Mop (plasmid) [Staphylococcus hyicus]
MVAGKSENASHLCHLKRSDLHMSYAVCRMQKVKSAGLKGMQFHNQRERKSRTNDDIDHERTRENYDLKND
KNIDYNERVKEIIESQKTGTRKTRKDAVLVNELLVTSDRDFFEQLDPGEQKRFFEESYKLFSERYGKQNI
AYATVHNDEQTPHMHLGVVPMRDGKLQGKNVFNRQELLWLQDKFPEHMKKQGFELKRGERGSDRKHIETA
KFKKQTLEKEIDFLEKNLAVKKDEWTAYSDKVKSDLEVPAKRHMKSVEVPTGEKSMFGLGKEIMKTEKKP
TKNVVISERDYKNLVTAARDNDRLKQHVRNLMSTDMAREYKKLSKEHGQVKEKYSGLVERFNENVNDYNE
LLEENKSLKSKISDLKRDVSLIYESTKEFLKERTDGLKAFKNVFKGFVDKVKDKTAQFQEKHDLEPKKNE
FELTHNREVKKERSRDQGMSL

  Protein domains


Predicted by InterproScan.

Plasmid recombination enzyme (Mob_Pre)

(22-214)


  Protein structure


Source ID Structure
AlphaFold DB G8EWI5


Host bacterium

ID   845 GenBank   NC_016139
Plasmid name   p9811071-1 Incompatibility group   _
Plasmid size   4019 bp Coordinate of oriT [Strand]   3520..3557 [-]
Host baterium   Staphylococcus hyicus

Cargo genes

Drug resistance gene   erm(C)
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -